Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01735

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01730 and MMJJ_RS01735 are separated by 154 nucleotidesMMJJ_RS01735 and MMJJ_RS01740 are separated by 133 nucleotides MMJJ_RS01730: MMJJ_RS01730 - ABC transporter permease, at 334,820 to 336,013 _RS01730 MMJJ_RS01735: MMJJ_RS01735 - rubrerythrin family protein, at 336,168 to 336,758 _RS01735 MMJJ_RS01740: MMJJ_RS01740 - ATP-binding protein, at 336,892 to 338,058 _RS01740 Position (kb) 336 337Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 335.214 kb on + strand, within MMJJ_RS01730at 335.220 kb on + strand, within MMJJ_RS01730at 335.234 kb on + strand, within MMJJ_RS01730at 335.267 kb on - strand, within MMJJ_RS01730at 335.336 kb on - strand, within MMJJ_RS01730at 335.337 kb on + strand, within MMJJ_RS01730at 335.360 kb on + strand, within MMJJ_RS01730at 335.365 kb on - strand, within MMJJ_RS01730at 335.365 kb on - strand, within MMJJ_RS01730at 335.376 kb on - strand, within MMJJ_RS01730at 335.377 kb on + strand, within MMJJ_RS01730at 335.423 kb on - strand, within MMJJ_RS01730at 335.423 kb on - strand, within MMJJ_RS01730at 335.423 kb on - strand, within MMJJ_RS01730at 335.467 kb on - strand, within MMJJ_RS01730at 335.489 kb on + strand, within MMJJ_RS01730at 335.519 kb on - strand, within MMJJ_RS01730at 335.596 kb on - strand, within MMJJ_RS01730at 335.597 kb on + strand, within MMJJ_RS01730at 335.597 kb on + strand, within MMJJ_RS01730at 335.613 kb on - strand, within MMJJ_RS01730at 335.637 kb on + strand, within MMJJ_RS01730at 335.643 kb on - strand, within MMJJ_RS01730at 335.644 kb on + strand, within MMJJ_RS01730at 335.679 kb on - strand, within MMJJ_RS01730at 335.800 kb on - strand, within MMJJ_RS01730at 335.834 kb on + strand, within MMJJ_RS01730at 335.905 kb on - strandat 335.905 kb on - strandat 335.909 kb on - strandat 335.910 kb on + strandat 335.910 kb on + strandat 335.910 kb on + strandat 335.924 kb on - strandat 335.972 kb on - strandat 335.972 kb on - strandat 335.973 kb on + strandat 336.053 kb on + strandat 336.067 kb on + strandat 336.081 kb on + strandat 336.090 kb on + strandat 336.098 kb on - strandat 336.099 kb on + strandat 336.111 kb on + strandat 336.111 kb on + strandat 336.112 kb on - strandat 336.113 kb on + strandat 336.116 kb on + strandat 336.116 kb on + strandat 336.149 kb on + strandat 336.170 kb on + strandat 336.173 kb on + strandat 336.196 kb on - strandat 336.196 kb on - strandat 336.196 kb on - strandat 336.196 kb on - strandat 336.197 kb on + strandat 336.197 kb on + strandat 336.249 kb on - strand, within MMJJ_RS01735at 336.282 kb on - strand, within MMJJ_RS01735at 336.282 kb on - strand, within MMJJ_RS01735at 336.282 kb on - strand, within MMJJ_RS01735at 336.282 kb on - strand, within MMJJ_RS01735at 336.282 kb on - strand, within MMJJ_RS01735at 336.283 kb on + strand, within MMJJ_RS01735at 336.283 kb on + strand, within MMJJ_RS01735at 336.330 kb on - strand, within MMJJ_RS01735at 336.331 kb on + strand, within MMJJ_RS01735at 336.382 kb on + strand, within MMJJ_RS01735at 336.493 kb on + strand, within MMJJ_RS01735at 336.497 kb on - strand, within MMJJ_RS01735at 336.497 kb on - strand, within MMJJ_RS01735at 336.497 kb on - strand, within MMJJ_RS01735at 336.506 kb on + strand, within MMJJ_RS01735at 336.506 kb on + strand, within MMJJ_RS01735at 336.512 kb on - strand, within MMJJ_RS01735at 336.676 kb on - strand, within MMJJ_RS01735at 336.683 kb on - strand, within MMJJ_RS01735at 336.683 kb on - strand, within MMJJ_RS01735at 336.684 kb on + strand, within MMJJ_RS01735at 336.685 kb on - strand, within MMJJ_RS01735at 336.690 kb on + strand, within MMJJ_RS01735at 336.690 kb on + strand, within MMJJ_RS01735at 336.770 kb on - strandat 336.772 kb on - strandat 336.773 kb on + strandat 336.773 kb on + strandat 336.780 kb on - strandat 336.781 kb on + strandat 336.786 kb on + strandat 336.794 kb on - strandat 336.795 kb on + strandat 336.795 kb on + strandat 336.796 kb on - strandat 336.798 kb on - strandat 336.799 kb on + strandat 336.801 kb on - strandat 336.801 kb on - strandat 336.824 kb on - strandat 336.824 kb on - strandat 336.825 kb on + strandat 336.825 kb on + strandat 336.825 kb on + strandat 336.838 kb on + strandat 336.887 kb on + strandat 337.047 kb on - strand, within MMJJ_RS01740at 337.076 kb on + strand, within MMJJ_RS01740at 337.124 kb on + strand, within MMJJ_RS01740at 337.126 kb on - strand, within MMJJ_RS01740at 337.143 kb on - strand, within MMJJ_RS01740at 337.155 kb on + strand, within MMJJ_RS01740at 337.155 kb on + strand, within MMJJ_RS01740at 337.212 kb on + strand, within MMJJ_RS01740at 337.213 kb on - strand, within MMJJ_RS01740at 337.214 kb on + strand, within MMJJ_RS01740at 337.264 kb on + strand, within MMJJ_RS01740at 337.320 kb on - strand, within MMJJ_RS01740at 337.321 kb on + strand, within MMJJ_RS01740at 337.393 kb on - strand, within MMJJ_RS01740at 337.396 kb on + strand, within MMJJ_RS01740at 337.426 kb on + strand, within MMJJ_RS01740at 337.518 kb on - strand, within MMJJ_RS01740at 337.578 kb on - strand, within MMJJ_RS01740at 337.614 kb on + strand, within MMJJ_RS01740at 337.683 kb on - strand, within MMJJ_RS01740at 337.683 kb on - strand, within MMJJ_RS01740at 337.716 kb on - strand, within MMJJ_RS01740at 337.717 kb on + strand, within MMJJ_RS01740at 337.717 kb on + strand, within MMJJ_RS01740at 337.717 kb on + strand, within MMJJ_RS01740at 337.718 kb on - strand, within MMJJ_RS01740at 337.718 kb on - strand, within MMJJ_RS01740at 337.719 kb on + strand, within MMJJ_RS01740at 337.719 kb on + strand, within MMJJ_RS01740at 337.719 kb on + strand, within MMJJ_RS01740at 337.723 kb on + strand, within MMJJ_RS01740at 337.723 kb on + strand, within MMJJ_RS01740at 337.741 kb on - strand, within MMJJ_RS01740

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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335,214 + MMJJ_RS01730 0.33 -1.9
335,220 + MMJJ_RS01730 0.34 -3.5
335,234 + MMJJ_RS01730 0.35 -0.3
335,267 - MMJJ_RS01730 0.37 +1.7
335,336 - MMJJ_RS01730 0.43 +0.1
335,337 + MMJJ_RS01730 0.43 -2.8
335,360 + MMJJ_RS01730 0.45 -0.3
335,365 - MMJJ_RS01730 0.46 -0.1
335,365 - MMJJ_RS01730 0.46 -1.3
335,376 - MMJJ_RS01730 0.47 +1.8
335,377 + MMJJ_RS01730 0.47 +0.6
335,423 - MMJJ_RS01730 0.51 +0.8
335,423 - MMJJ_RS01730 0.51 -0.1
335,423 - MMJJ_RS01730 0.51 -2.4
335,467 - MMJJ_RS01730 0.54 +1.1
335,489 + MMJJ_RS01730 0.56 -1.2
335,519 - MMJJ_RS01730 0.59 +2.5
335,596 - MMJJ_RS01730 0.65 -1.1
335,597 + MMJJ_RS01730 0.65 -0.6
335,597 + MMJJ_RS01730 0.65 -0.7
335,613 - MMJJ_RS01730 0.66 +0.5
335,637 + MMJJ_RS01730 0.68 -2.6
335,643 - MMJJ_RS01730 0.69 +0.3
335,644 + MMJJ_RS01730 0.69 -1.3
335,679 - MMJJ_RS01730 0.72 -1.1
335,800 - MMJJ_RS01730 0.82 +0.9
335,834 + MMJJ_RS01730 0.85 +0.2
335,905 - +0.7
335,905 - -0.4
335,909 - -1.8
335,910 + +0.9
335,910 + +0.6
335,910 + -1.5
335,924 - -1.3
335,972 - -2.9
335,972 - +0.7
335,973 + +0.5
336,053 + +4.1
336,067 + -0.1
336,081 + +0.1
336,090 + -2.5
336,098 - -0.6
336,099 + +1.2
336,111 + +0.8
336,111 + -3.8
336,112 - +1.3
336,113 + -1.3
336,116 + -0.8
336,116 + +0.8
336,149 + -4.2
336,170 + -1.4
336,173 + -1.6
336,196 - -2.5
336,196 - +0.1
336,196 - -2.1
336,196 - +0.6
336,197 + -0.7
336,197 + +0.4
336,249 - MMJJ_RS01735 0.14 +0.9
336,282 - MMJJ_RS01735 0.19 -0.5
336,282 - MMJJ_RS01735 0.19 +1.0
336,282 - MMJJ_RS01735 0.19 +1.5
336,282 - MMJJ_RS01735 0.19 +0.1
336,282 - MMJJ_RS01735 0.19 +3.3
336,283 + MMJJ_RS01735 0.19 +0.2
336,283 + MMJJ_RS01735 0.19 +1.3
336,330 - MMJJ_RS01735 0.27 -0.4
336,331 + MMJJ_RS01735 0.28 +2.8
336,382 + MMJJ_RS01735 0.36 -3.1
336,493 + MMJJ_RS01735 0.55 +2.9
336,497 - MMJJ_RS01735 0.56 -3.6
336,497 - MMJJ_RS01735 0.56 +1.3
336,497 - MMJJ_RS01735 0.56 +2.4
336,506 + MMJJ_RS01735 0.57 +3.7
336,506 + MMJJ_RS01735 0.57 +0.3
336,512 - MMJJ_RS01735 0.58 +2.9
336,676 - MMJJ_RS01735 0.86 +0.1
336,683 - MMJJ_RS01735 0.87 -0.7
336,683 - MMJJ_RS01735 0.87 +0.4
336,684 + MMJJ_RS01735 0.87 +1.6
336,685 - MMJJ_RS01735 0.87 +0.3
336,690 + MMJJ_RS01735 0.88 +1.1
336,690 + MMJJ_RS01735 0.88 +1.4
336,770 - +2.2
336,772 - -0.2
336,773 + -4.0
336,773 + +2.6
336,780 - -2.3
336,781 + +1.2
336,786 + -1.3
336,794 - +1.1
336,795 + +0.7
336,795 + +1.9
336,796 - +1.6
336,798 - -1.5
336,799 + -1.3
336,801 - -1.3
336,801 - +1.5
336,824 - +1.3
336,824 - +0.2
336,825 + -0.8
336,825 + -1.6
336,825 + -4.4
336,838 + +3.1
336,887 + +0.1
337,047 - MMJJ_RS01740 0.13 +2.4
337,076 + MMJJ_RS01740 0.16 -0.3
337,124 + MMJJ_RS01740 0.20 -0.3
337,126 - MMJJ_RS01740 0.20 -1.4
337,143 - MMJJ_RS01740 0.22 -3.7
337,155 + MMJJ_RS01740 0.23 -0.8
337,155 + MMJJ_RS01740 0.23 +1.5
337,212 + MMJJ_RS01740 0.27 -0.6
337,213 - MMJJ_RS01740 0.28 -0.1
337,214 + MMJJ_RS01740 0.28 -2.8
337,264 + MMJJ_RS01740 0.32 +0.3
337,320 - MMJJ_RS01740 0.37 +2.0
337,321 + MMJJ_RS01740 0.37 -1.6
337,393 - MMJJ_RS01740 0.43 +2.3
337,396 + MMJJ_RS01740 0.43 -1.8
337,426 + MMJJ_RS01740 0.46 -0.5
337,518 - MMJJ_RS01740 0.54 -1.5
337,578 - MMJJ_RS01740 0.59 +2.2
337,614 + MMJJ_RS01740 0.62 -1.4
337,683 - MMJJ_RS01740 0.68 -2.4
337,683 - MMJJ_RS01740 0.68 -1.4
337,716 - MMJJ_RS01740 0.71 +1.7
337,717 + MMJJ_RS01740 0.71 +0.7
337,717 + MMJJ_RS01740 0.71 -0.4
337,717 + MMJJ_RS01740 0.71 +0.3
337,718 - MMJJ_RS01740 0.71 -1.3
337,718 - MMJJ_RS01740 0.71 -1.0
337,719 + MMJJ_RS01740 0.71 -0.4
337,719 + MMJJ_RS01740 0.71 +0.8
337,719 + MMJJ_RS01740 0.71 +2.2
337,723 + MMJJ_RS01740 0.71 +4.5
337,723 + MMJJ_RS01740 0.71 +2.0
337,741 - MMJJ_RS01740 0.73 -1.5

Or see this region's nucleotide sequence