Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01500

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01495 and MMJJ_RS01500 are separated by 121 nucleotidesMMJJ_RS01500 and MMJJ_RS01505 are separated by 122 nucleotidesMMJJ_RS01505 and MMJJ_RS01510 are separated by 95 nucleotides MMJJ_RS01495: MMJJ_RS01495 - Na+/H+ antiporter NhaC family protein, at 292,328 to 293,905 _RS01495 MMJJ_RS01500: MMJJ_RS01500 - transcriptional regulator, at 294,027 to 295,007 _RS01500 MMJJ_RS01505: MMJJ_RS01505 - DUF2124 domain-containing protein, at 295,130 to 295,606 _RS01505 MMJJ_RS01510: MMJJ_RS01510 - ATP-binding protein, at 295,702 to 297,099 _RS01510 Position (kb) 294 295 296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 293.073 kb on - strand, within MMJJ_RS01495at 293.073 kb on - strand, within MMJJ_RS01495at 293.124 kb on - strand, within MMJJ_RS01495at 293.154 kb on - strand, within MMJJ_RS01495at 293.160 kb on - strand, within MMJJ_RS01495at 293.161 kb on + strand, within MMJJ_RS01495at 293.164 kb on + strand, within MMJJ_RS01495at 293.195 kb on + strand, within MMJJ_RS01495at 293.309 kb on - strand, within MMJJ_RS01495at 293.393 kb on + strand, within MMJJ_RS01495at 293.393 kb on + strand, within MMJJ_RS01495at 293.403 kb on - strand, within MMJJ_RS01495at 293.404 kb on + strand, within MMJJ_RS01495at 293.404 kb on + strand, within MMJJ_RS01495at 293.404 kb on + strand, within MMJJ_RS01495at 293.418 kb on - strand, within MMJJ_RS01495at 293.419 kb on + strand, within MMJJ_RS01495at 293.427 kb on - strand, within MMJJ_RS01495at 293.428 kb on + strand, within MMJJ_RS01495at 293.428 kb on + strand, within MMJJ_RS01495at 293.428 kb on + strand, within MMJJ_RS01495at 293.428 kb on + strand, within MMJJ_RS01495at 293.453 kb on - strand, within MMJJ_RS01495at 293.454 kb on + strand, within MMJJ_RS01495at 293.454 kb on + strand, within MMJJ_RS01495at 293.454 kb on + strand, within MMJJ_RS01495at 293.506 kb on + strand, within MMJJ_RS01495at 293.506 kb on + strand, within MMJJ_RS01495at 293.506 kb on + strand, within MMJJ_RS01495at 293.545 kb on - strand, within MMJJ_RS01495at 293.557 kb on - strand, within MMJJ_RS01495at 293.558 kb on + strand, within MMJJ_RS01495at 293.658 kb on - strand, within MMJJ_RS01495at 293.658 kb on - strand, within MMJJ_RS01495at 293.658 kb on - strand, within MMJJ_RS01495at 293.658 kb on - strand, within MMJJ_RS01495at 293.658 kb on - strand, within MMJJ_RS01495at 293.659 kb on + strand, within MMJJ_RS01495at 293.659 kb on + strand, within MMJJ_RS01495at 293.659 kb on + strand, within MMJJ_RS01495at 293.660 kb on - strand, within MMJJ_RS01495at 293.660 kb on - strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.661 kb on + strand, within MMJJ_RS01495at 293.690 kb on + strand, within MMJJ_RS01495at 293.690 kb on + strand, within MMJJ_RS01495at 293.787 kb on - strandat 293.792 kb on - strandat 293.793 kb on + strandat 293.793 kb on + strandat 293.803 kb on + strandat 293.807 kb on - strandat 293.807 kb on - strandat 293.808 kb on + strandat 293.821 kb on + strandat 293.832 kb on - strandat 293.833 kb on + strandat 293.842 kb on - strandat 293.843 kb on + strandat 293.843 kb on + strandat 293.846 kb on + strandat 293.860 kb on + strandat 293.872 kb on + strandat 293.873 kb on - strandat 293.873 kb on - strandat 293.873 kb on - strandat 293.873 kb on - strandat 293.874 kb on + strandat 293.874 kb on + strandat 293.875 kb on - strandat 293.875 kb on - strandat 293.876 kb on + strandat 293.876 kb on + strandat 293.876 kb on + strandat 293.876 kb on + strandat 293.908 kb on - strandat 293.909 kb on + strandat 293.910 kb on - strandat 293.961 kb on + strandat 293.987 kb on - strandat 293.987 kb on - strandat 294.025 kb on + strandat 294.028 kb on - strandat 294.073 kb on + strandat 294.103 kb on + strandat 294.104 kb on - strandat 294.110 kb on - strandat 294.110 kb on - strandat 294.111 kb on + strandat 294.116 kb on - strandat 294.117 kb on + strandat 294.214 kb on + strand, within MMJJ_RS01500at 294.214 kb on + strand, within MMJJ_RS01500at 294.239 kb on - strand, within MMJJ_RS01500at 294.245 kb on - strand, within MMJJ_RS01500at 294.254 kb on - strand, within MMJJ_RS01500at 294.328 kb on + strand, within MMJJ_RS01500at 294.433 kb on + strand, within MMJJ_RS01500at 294.453 kb on - strand, within MMJJ_RS01500at 294.487 kb on - strand, within MMJJ_RS01500at 294.542 kb on + strand, within MMJJ_RS01500at 294.545 kb on - strand, within MMJJ_RS01500at 294.546 kb on + strand, within MMJJ_RS01500at 294.547 kb on - strand, within MMJJ_RS01500at 294.547 kb on - strand, within MMJJ_RS01500at 294.573 kb on - strand, within MMJJ_RS01500at 294.713 kb on - strand, within MMJJ_RS01500at 294.748 kb on + strand, within MMJJ_RS01500at 294.889 kb on + strand, within MMJJ_RS01500at 294.908 kb on - strand, within MMJJ_RS01500at 294.994 kb on + strandat 295.007 kb on - strandat 295.014 kb on - strandat 295.028 kb on - strandat 295.038 kb on + strandat 295.050 kb on + strandat 295.067 kb on - strandat 295.090 kb on + strandat 295.091 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.093 kb on - strandat 295.094 kb on + strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.096 kb on - strandat 295.097 kb on + strandat 295.097 kb on + strandat 295.097 kb on + strandat 295.097 kb on + strandat 295.100 kb on + strandat 295.100 kb on + strandat 295.108 kb on + strandat 295.282 kb on - strand, within MMJJ_RS01505at 295.295 kb on - strand, within MMJJ_RS01505at 295.295 kb on - strand, within MMJJ_RS01505at 295.317 kb on - strand, within MMJJ_RS01505at 295.366 kb on - strand, within MMJJ_RS01505at 295.367 kb on + strand, within MMJJ_RS01505at 295.378 kb on - strand, within MMJJ_RS01505at 295.378 kb on - strand, within MMJJ_RS01505at 295.379 kb on + strand, within MMJJ_RS01505at 295.391 kb on + strand, within MMJJ_RS01505at 295.444 kb on - strand, within MMJJ_RS01505at 295.563 kb on - strandat 295.566 kb on - strandat 295.567 kb on + strandat 295.609 kb on - strandat 295.609 kb on - strandat 295.610 kb on + strandat 295.610 kb on + strandat 295.610 kb on + strandat 295.610 kb on + strandat 295.637 kb on + strandat 295.655 kb on - strandat 295.661 kb on + strandat 295.667 kb on - strandat 295.667 kb on - strandat 295.668 kb on + strandat 295.668 kb on + strandat 295.671 kb on - strandat 295.671 kb on - strandat 295.672 kb on + strandat 295.679 kb on - strandat 295.700 kb on - strandat 295.701 kb on + strandat 295.701 kb on + strandat 295.706 kb on - strandat 295.706 kb on - strandat 295.707 kb on + strandat 295.707 kb on + strandat 295.788 kb on - strandat 295.789 kb on + strandat 295.789 kb on + strandat 295.793 kb on - strandat 295.794 kb on + strandat 295.796 kb on + strandat 295.797 kb on - strandat 295.820 kb on - strandat 295.839 kb on - strandat 295.839 kb on - strandat 295.841 kb on - strandat 295.845 kb on + strand, within MMJJ_RS01510at 295.863 kb on - strand, within MMJJ_RS01510at 295.920 kb on - strand, within MMJJ_RS01510at 295.923 kb on + strand, within MMJJ_RS01510at 295.954 kb on + strand, within MMJJ_RS01510at 295.966 kb on - strand, within MMJJ_RS01510at 295.966 kb on - strand, within MMJJ_RS01510at 295.967 kb on + strand, within MMJJ_RS01510at 295.967 kb on + strand, within MMJJ_RS01510at 295.967 kb on + strand, within MMJJ_RS01510at 295.986 kb on + strand, within MMJJ_RS01510at 296.001 kb on + strand, within MMJJ_RS01510

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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293,073 - MMJJ_RS01495 0.47 -0.5
293,073 - MMJJ_RS01495 0.47 +4.5
293,124 - MMJJ_RS01495 0.50 +1.5
293,154 - MMJJ_RS01495 0.52 -0.1
293,160 - MMJJ_RS01495 0.53 +1.2
293,161 + MMJJ_RS01495 0.53 +1.8
293,164 + MMJJ_RS01495 0.53 +1.0
293,195 + MMJJ_RS01495 0.55 +0.6
293,309 - MMJJ_RS01495 0.62 -1.3
293,393 + MMJJ_RS01495 0.67 +0.2
293,393 + MMJJ_RS01495 0.67 +2.0
293,403 - MMJJ_RS01495 0.68 +0.3
293,404 + MMJJ_RS01495 0.68 -0.8
293,404 + MMJJ_RS01495 0.68 -0.3
293,404 + MMJJ_RS01495 0.68 -0.7
293,418 - MMJJ_RS01495 0.69 +2.3
293,419 + MMJJ_RS01495 0.69 +2.6
293,427 - MMJJ_RS01495 0.70 -2.5
293,428 + MMJJ_RS01495 0.70 -0.5
293,428 + MMJJ_RS01495 0.70 -1.8
293,428 + MMJJ_RS01495 0.70 -2.5
293,428 + MMJJ_RS01495 0.70 +1.0
293,453 - MMJJ_RS01495 0.71 +0.6
293,454 + MMJJ_RS01495 0.71 +1.6
293,454 + MMJJ_RS01495 0.71 +0.9
293,454 + MMJJ_RS01495 0.71 +2.6
293,506 + MMJJ_RS01495 0.75 +1.6
293,506 + MMJJ_RS01495 0.75 +0.1
293,506 + MMJJ_RS01495 0.75 -4.1
293,545 - MMJJ_RS01495 0.77 +0.4
293,557 - MMJJ_RS01495 0.78 +3.4
293,558 + MMJJ_RS01495 0.78 +0.0
293,658 - MMJJ_RS01495 0.84 +1.3
293,658 - MMJJ_RS01495 0.84 +1.7
293,658 - MMJJ_RS01495 0.84 +0.9
293,658 - MMJJ_RS01495 0.84 -2.2
293,658 - MMJJ_RS01495 0.84 -0.1
293,659 + MMJJ_RS01495 0.84 -4.2
293,659 + MMJJ_RS01495 0.84 -0.0
293,659 + MMJJ_RS01495 0.84 +1.1
293,660 - MMJJ_RS01495 0.84 +2.7
293,660 - MMJJ_RS01495 0.84 +1.4
293,661 + MMJJ_RS01495 0.84 -0.9
293,661 + MMJJ_RS01495 0.84 -0.6
293,661 + MMJJ_RS01495 0.84 +1.0
293,661 + MMJJ_RS01495 0.84 +2.1
293,661 + MMJJ_RS01495 0.84 -1.5
293,661 + MMJJ_RS01495 0.84 +1.3
293,661 + MMJJ_RS01495 0.84 +0.8
293,661 + MMJJ_RS01495 0.84 +0.4
293,661 + MMJJ_RS01495 0.84 +2.7
293,690 + MMJJ_RS01495 0.86 +0.7
293,690 + MMJJ_RS01495 0.86 -0.0
293,787 - +0.5
293,792 - -1.1
293,793 + -2.5
293,793 + +2.2
293,803 + +0.5
293,807 - +0.1
293,807 - +1.2
293,808 + +3.7
293,821 + +1.9
293,832 - -2.1
293,833 + -0.3
293,842 - +2.9
293,843 + +0.8
293,843 + +2.4
293,846 + +2.1
293,860 + +0.2
293,872 + -0.5
293,873 - -0.2
293,873 - +1.2
293,873 - -0.0
293,873 - -0.1
293,874 + -1.2
293,874 + -1.0
293,875 - -1.0
293,875 - -0.4
293,876 + -0.4
293,876 + +0.5
293,876 + +2.0
293,876 + -1.5
293,908 - +3.0
293,909 + -2.5
293,910 - -3.9
293,961 + +1.7
293,987 - +1.5
293,987 - -0.4
294,025 + -1.1
294,028 - -0.5
294,073 + -2.2
294,103 + -4.2
294,104 - -0.3
294,110 - -1.7
294,110 - -0.9
294,111 + -1.1
294,116 - -1.3
294,117 + +1.3
294,214 + MMJJ_RS01500 0.19 -2.3
294,214 + MMJJ_RS01500 0.19 -3.6
294,239 - MMJJ_RS01500 0.22 -2.0
294,245 - MMJJ_RS01500 0.22 -2.1
294,254 - MMJJ_RS01500 0.23 -2.6
294,328 + MMJJ_RS01500 0.31 -3.0
294,433 + MMJJ_RS01500 0.41 +0.2
294,453 - MMJJ_RS01500 0.43 -0.8
294,487 - MMJJ_RS01500 0.47 -1.0
294,542 + MMJJ_RS01500 0.52 -2.5
294,545 - MMJJ_RS01500 0.53 -1.4
294,546 + MMJJ_RS01500 0.53 -2.8
294,547 - MMJJ_RS01500 0.53 -2.0
294,547 - MMJJ_RS01500 0.53 -0.4
294,573 - MMJJ_RS01500 0.56 -2.1
294,713 - MMJJ_RS01500 0.70 -2.3
294,748 + MMJJ_RS01500 0.73 -3.7
294,889 + MMJJ_RS01500 0.88 -3.6
294,908 - MMJJ_RS01500 0.90 -2.1
294,994 + +0.1
295,007 - -1.1
295,014 - -1.9
295,028 - -2.6
295,038 + -4.5
295,050 + -0.6
295,067 - +0.2
295,090 + +0.9
295,091 - +0.8
295,093 - -2.4
295,093 - +0.0
295,093 - +1.0
295,093 - +1.9
295,093 - -0.2
295,094 + +1.9
295,096 - +1.9
295,096 - +0.5
295,096 - +1.6
295,096 - -2.9
295,096 - +2.4
295,096 - +0.5
295,097 + -1.1
295,097 + +1.2
295,097 + +0.1
295,097 + -0.9
295,100 + -1.6
295,100 + +0.8
295,108 + +1.8
295,282 - MMJJ_RS01505 0.32 +1.3
295,295 - MMJJ_RS01505 0.35 +0.7
295,295 - MMJJ_RS01505 0.35 -1.1
295,317 - MMJJ_RS01505 0.39 +4.0
295,366 - MMJJ_RS01505 0.49 +0.1
295,367 + MMJJ_RS01505 0.50 -3.0
295,378 - MMJJ_RS01505 0.52 +2.4
295,378 - MMJJ_RS01505 0.52 -1.1
295,379 + MMJJ_RS01505 0.52 +2.2
295,391 + MMJJ_RS01505 0.55 -3.2
295,444 - MMJJ_RS01505 0.66 +0.3
295,563 - +0.7
295,566 - +4.1
295,567 + -1.5
295,609 - -2.6
295,609 - -3.1
295,610 + +0.4
295,610 + +0.9
295,610 + -0.9
295,610 + +2.9
295,637 + +0.6
295,655 - -2.2
295,661 + +0.6
295,667 - -2.0
295,667 - +2.9
295,668 + +3.1
295,668 + -1.0
295,671 - -0.8
295,671 - +0.7
295,672 + -2.9
295,679 - -1.0
295,700 - +1.7
295,701 + +0.2
295,701 + -2.5
295,706 - -2.1
295,706 - +2.8
295,707 + -1.2
295,707 + +2.1
295,788 - -0.2
295,789 + +1.0
295,789 + -2.3
295,793 - +2.2
295,794 + -1.5
295,796 + -2.0
295,797 - +1.7
295,820 - -1.9
295,839 - -1.0
295,839 - +2.8
295,841 - -0.2
295,845 + MMJJ_RS01510 0.10 +1.9
295,863 - MMJJ_RS01510 0.12 +2.7
295,920 - MMJJ_RS01510 0.16 -2.1
295,923 + MMJJ_RS01510 0.16 +1.2
295,954 + MMJJ_RS01510 0.18 +4.1
295,966 - MMJJ_RS01510 0.19 -1.4
295,966 - MMJJ_RS01510 0.19 -0.9
295,967 + MMJJ_RS01510 0.19 -0.0
295,967 + MMJJ_RS01510 0.19 +0.2
295,967 + MMJJ_RS01510 0.19 -1.1
295,986 + MMJJ_RS01510 0.20 -2.9
296,001 + MMJJ_RS01510 0.21 -1.9

Or see this region's nucleotide sequence