Strain Fitness in Methanococcus maripaludis JJ

Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00615

Experiment: Formate N-free with 2mM Adenosine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	Formate N-free with 2mM Adenosine
				remove
116,307	-			+0.1
116,307	-			+0.9
116,318	-			+0.3
116,319	+			+1.0
116,322	-			+3.6
116,322	-			-1.5
116,323	+			+0.5
116,323	+			+0.3
116,323	+			+1.4
116,327	+			-0.9
116,327	+			+0.5
116,336	+			-2.4
116,336	+			-1.2
116,337	-			-0.9
116,372	+			+0.4
116,386	-			+0.1
116,386	-			+3.4
116,406	+			-1.8
116,406	+			-0.2
116,431	-	MMJJ_RS00610	0.12	+1.2
116,431	-	MMJJ_RS00610	0.12	-1.9
116,431	-	MMJJ_RS00610	0.12	+1.6
116,431	-	MMJJ_RS00610	0.12	-2.0
116,432	+	MMJJ_RS00610	0.12	-0.5
116,432	+	MMJJ_RS00610	0.12	+0.7
116,433	-	MMJJ_RS00610	0.12	+1.9
116,433	-	MMJJ_RS00610	0.12	-1.3
116,433	-	MMJJ_RS00610	0.12	+1.1
116,433	-	MMJJ_RS00610	0.12	+0.2
116,433	-	MMJJ_RS00610	0.12	-2.1
116,433	-	MMJJ_RS00610	0.12	+1.6
116,433	-	MMJJ_RS00610	0.12	-1.7
116,434	+	MMJJ_RS00610	0.12	-0.4
116,434	+	MMJJ_RS00610	0.12	-1.9
116,434	+	MMJJ_RS00610	0.12	+1.1
116,434	+	MMJJ_RS00610	0.12	+1.0
116,434	+	MMJJ_RS00610	0.12	-2.1
116,434	+	MMJJ_RS00610	0.12	+0.3
116,434	+	MMJJ_RS00610	0.12	-2.3
116,434	+	MMJJ_RS00610	0.12	+2.1
116,434	+	MMJJ_RS00610	0.12	-0.2
116,434	+	MMJJ_RS00610	0.12	+1.2
116,434	+	MMJJ_RS00610	0.12	+1.3
116,434	+	MMJJ_RS00610	0.12	-1.5
116,434	+	MMJJ_RS00610	0.12	+1.9
116,434	+	MMJJ_RS00610	0.12	+2.5
116,434	+	MMJJ_RS00610	0.12	+2.3
116,434	+	MMJJ_RS00610	0.12	-3.0
116,435	-	MMJJ_RS00610	0.12	+1.9
116,435	-	MMJJ_RS00610	0.12	+2.2
116,435	-	MMJJ_RS00610	0.12	-0.3
116,435	-	MMJJ_RS00610	0.12	-0.6
116,436	+	MMJJ_RS00610	0.12	+1.1
116,436	+	MMJJ_RS00610	0.12	+1.8
116,436	+	MMJJ_RS00610	0.12	-0.0
116,436	+	MMJJ_RS00610	0.12	+0.2
116,439	-	MMJJ_RS00610	0.13	-1.1
116,439	-	MMJJ_RS00610	0.13	+1.8
116,440	+	MMJJ_RS00610	0.13	+2.7
116,451	-	MMJJ_RS00610	0.14	-2.4
116,463	-	MMJJ_RS00610	0.15	+2.1
116,464	+	MMJJ_RS00610	0.15	+0.5
116,575	+	MMJJ_RS00610	0.27	-3.0
116,665	-	MMJJ_RS00610	0.36	+0.4
116,746	-	MMJJ_RS00610	0.45	-0.8
116,815	-	MMJJ_RS00610	0.52	+0.5
116,916	-	MMJJ_RS00610	0.63	-0.4
116,944	+	MMJJ_RS00610	0.66	+1.0
116,998	-	MMJJ_RS00610	0.71	+2.8
116,999	+	MMJJ_RS00610	0.71	+2.1
117,031	+	MMJJ_RS00610	0.75	-0.9
117,042	-	MMJJ_RS00610	0.76	-4.8
117,044	-	MMJJ_RS00610	0.76	-1.9
117,044	-	MMJJ_RS00610	0.76	-1.3
117,044	-	MMJJ_RS00610	0.76	-1.4
117,044	-	MMJJ_RS00610	0.76	-1.0
117,045	+	MMJJ_RS00610	0.76	+0.0
117,057	-	MMJJ_RS00610	0.78	-2.5
117,068	-	MMJJ_RS00610	0.79	-2.5
117,068	-	MMJJ_RS00610	0.79	-0.2
117,069	+	MMJJ_RS00610	0.79	+0.4
117,109	-	MMJJ_RS00610	0.83	+1.9
117,110	+	MMJJ_RS00610	0.83	+1.4
117,110	+	MMJJ_RS00610	0.83	-4.2
117,183	+			+1.2
117,183	+			-0.1
117,262	-			+0.0
117,293	-			+1.6
117,298	-			+4.1
117,299	+			+2.4
117,304	+			-2.6
117,313	-			-1.9
117,345	+			-0.5
117,455	-	MMJJ_RS00615	0.35	-1.6
117,456	+	MMJJ_RS00615	0.35	-0.4
117,480	+	MMJJ_RS00615	0.41	-0.8
117,480	+	MMJJ_RS00615	0.41	-3.2
117,522	-	MMJJ_RS00615	0.50	+1.2
117,523	+	MMJJ_RS00615	0.50	-3.0
117,523	+	MMJJ_RS00615	0.50	+2.8
117,626	+	MMJJ_RS00615	0.74	-3.0
117,655	+	MMJJ_RS00615	0.81	-1.9
117,659	-	MMJJ_RS00615	0.82	+1.7
117,692	+	MMJJ_RS00615	0.89	-0.6
117,698	-			+2.1
117,699	+			+0.2
117,758	+			+0.3
117,766	+			-0.1
117,784	-			+0.1
117,805	-			+3.2
117,805	-			-1.3
117,806	+			-2.1
117,806	+			+2.4
117,807	-			+1.0
117,807	-			+4.0
117,807	-			+1.1
117,808	+			+2.0
117,809	-			+2.2
117,809	-			-2.5
117,809	-			-3.4
117,809	-			+1.4
117,809	-			-0.2
117,809	-			+2.4
117,809	-			-1.2
117,809	-			-1.7
117,809	-			+1.4
117,809	-			-3.0
117,810	+			-1.3
117,810	+			+1.9
117,810	+			-0.5
117,810	+			+0.9
117,810	+			-1.5
117,810	+			-1.1
117,811	-			-1.6
117,811	-			-0.4
117,811	-			-0.5
117,811	-			-1.1
117,811	-			+3.1
117,811	-			-1.4
117,811	-			+0.8
117,811	-			+1.3
117,811	-			-1.0
117,812	+			+1.2
117,812	+			-0.4
117,813	-			-0.5
117,813	-			-2.5
117,813	-			+1.0
117,816	+			+0.7
117,816	+			-4.5
117,853	+			-2.5
117,858	-			+1.4
117,858	-			+0.2
117,940	+			-0.9
117,987	-			+1.5
117,987	-			+0.7
117,987	-			-1.6
117,988	+			+3.4
117,989	-			+3.0
117,989	-			-2.7
117,989	-			+0.6
117,989	-			+2.3
117,989	-			-1.8
117,990	+			-1.4
117,990	+			+0.4
117,990	+			+1.5
117,990	+			+1.0
117,990	+			-3.3
117,991	-			-1.5
117,991	-			+0.5
117,991	-			-1.4
117,991	-			-0.3
117,991	-			+2.8
117,991	-			+1.5
117,991	-			-0.5
117,992	+			+0.2
117,992	+			-2.3
117,992	+			-0.0
117,992	+			-1.6
117,992	+			+0.4
117,996	-	MMJJ_RS00620	0.10	-1.7
117,997	+	MMJJ_RS00620	0.10	+0.9
117,997	+	MMJJ_RS00620	0.10	+0.2
117,997	+	MMJJ_RS00620	0.10	-2.1
118,001	-	MMJJ_RS00620	0.11	+1.2
118,001	-	MMJJ_RS00620	0.11	-1.8
118,001	-	MMJJ_RS00620	0.11	+0.6
118,012	-	MMJJ_RS00620	0.11	+1.0
118,013	+	MMJJ_RS00620	0.12	+1.1
118,013	+	MMJJ_RS00620	0.12	+1.5
118,041	-	MMJJ_RS00620	0.14	+1.7
118,042	+	MMJJ_RS00620	0.14	+1.5
118,051	+	MMJJ_RS00620	0.15	-2.0
118,108	+	MMJJ_RS00620	0.19	-0.1
118,108	+	MMJJ_RS00620	0.19	+2.0
118,108	+	MMJJ_RS00620	0.19	+3.6
118,109	-	MMJJ_RS00620	0.19	-2.6
118,150	-	MMJJ_RS00620	0.22	-0.9
118,151	+	MMJJ_RS00620	0.22	+0.0
118,167	+	MMJJ_RS00620	0.24	-3.9
118,172	-	MMJJ_RS00620	0.24	+5.4
118,172	-	MMJJ_RS00620	0.24	-0.2
118,172	-	MMJJ_RS00620	0.24	-2.2
118,172	-	MMJJ_RS00620	0.24	-0.5
118,172	-	MMJJ_RS00620	0.24	-0.3
118,172	-	MMJJ_RS00620	0.24	+1.7
118,172	-	MMJJ_RS00620	0.24	+0.5
118,172	-	MMJJ_RS00620	0.24	-0.4
118,172	-	MMJJ_RS00620	0.24	+1.6
118,172	-	MMJJ_RS00620	0.24	-5.1
118,172	-	MMJJ_RS00620	0.24	-1.0
118,173	+	MMJJ_RS00620	0.24	+1.0
118,173	+	MMJJ_RS00620	0.24	+0.2
118,173	+	MMJJ_RS00620	0.24	+1.4
118,173	+	MMJJ_RS00620	0.24	+2.8
118,173	+	MMJJ_RS00620	0.24	-0.7
118,173	+	MMJJ_RS00620	0.24	-0.7
118,173	+	MMJJ_RS00620	0.24	+2.6
118,173	+	MMJJ_RS00620	0.24	+3.3
118,173	+	MMJJ_RS00620	0.24	+2.4
118,176	-	MMJJ_RS00620	0.24	+2.4
118,177	+	MMJJ_RS00620	0.24	-0.1
118,182	-	MMJJ_RS00620	0.25	+2.2
118,182	-	MMJJ_RS00620	0.25	-2.0
118,183	+	MMJJ_RS00620	0.25	-1.7
118,183	+	MMJJ_RS00620	0.25	-0.9
118,183	+	MMJJ_RS00620	0.25	-0.1
118,184	-	MMJJ_RS00620	0.25	+0.6
118,184	-	MMJJ_RS00620	0.25	+0.6
118,184	-	MMJJ_RS00620	0.25	+2.4
118,184	-	MMJJ_RS00620	0.25	-0.7
118,185	+	MMJJ_RS00620	0.25	+0.3
118,185	+	MMJJ_RS00620	0.25	-0.2
118,185	+	MMJJ_RS00620	0.25	+1.2
118,185	+	MMJJ_RS00620	0.25	+0.3
118,185	+	MMJJ_RS00620	0.25	-2.0
118,185	+	MMJJ_RS00620	0.25	-1.5
118,185	+	MMJJ_RS00620	0.25	-2.3
118,192	-	MMJJ_RS00620	0.26	+1.0
118,192	-	MMJJ_RS00620	0.26	-0.6
118,193	+	MMJJ_RS00620	0.26	+1.3
118,217	-	MMJJ_RS00620	0.27	-0.8
118,241	-	MMJJ_RS00620	0.29	+2.7
118,245	-	MMJJ_RS00620	0.30	+0.9
118,246	+	MMJJ_RS00620	0.30	+4.3
118,276	-	MMJJ_RS00620	0.32	+0.7
118,277	+	MMJJ_RS00620	0.32	-0.9
118,317	-	MMJJ_RS00620	0.35	+0.4
118,318	+	MMJJ_RS00620	0.35	+3.1
118,318	+	MMJJ_RS00620	0.35	+0.5
118,378	+	MMJJ_RS00620	0.40	+3.2
118,381	-	MMJJ_RS00620	0.40	+0.4
118,382	+	MMJJ_RS00620	0.40	+0.7
118,385	-	MMJJ_RS00620	0.41	-1.0
118,386	+	MMJJ_RS00620	0.41	+4.5
118,457	-	MMJJ_RS00620	0.46	-2.7
118,458	+	MMJJ_RS00620	0.46	-2.1
118,460	+	MMJJ_RS00620	0.46	+2.7
118,460	+	MMJJ_RS00620	0.46	+0.4
118,553	-	MMJJ_RS00620	0.54	+2.6
118,555	-	MMJJ_RS00620	0.54	-2.0
118,640	-	MMJJ_RS00620	0.60	+0.6
118,662	+	MMJJ_RS00620	0.62	+0.9
118,667	+	MMJJ_RS00620	0.63	-1.9
118,699	+	MMJJ_RS00620	0.65	+1.7
118,699	+	MMJJ_RS00620	0.65	+1.3
118,699	+	MMJJ_RS00620	0.65	-0.0
118,699	+	MMJJ_RS00620	0.65	-0.9
118,699	+	MMJJ_RS00620	0.65	+0.2
118,699	+	MMJJ_RS00620	0.65	+1.0
118,722	-	MMJJ_RS00620	0.67	-0.9
118,722	-	MMJJ_RS00620	0.67	-1.5
118,723	+	MMJJ_RS00620	0.67	+0.7

Or see this region's nucleotide sequence