Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00265

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00255 and MMJJ_RS00260 are separated by 108 nucleotidesMMJJ_RS00260 and MMJJ_RS00265 are separated by 22 nucleotidesMMJJ_RS00265 and MMJJ_RS00270 are separated by 15 nucleotidesMMJJ_RS00270 and MMJJ_RS00275 are separated by 53 nucleotides MMJJ_RS00255: MMJJ_RS00255 - phosphoadenosine phosphosulfate reductase family protein, at 49,881 to 51,392 _RS00255 MMJJ_RS00260: MMJJ_RS00260 - energy-converting hydrogenase B subunit EhbP, at 51,501 to 51,788 _RS00260 MMJJ_RS00265: MMJJ_RS00265 - TIGR02253 family HAD-type hydrolase, at 51,811 to 52,488 _RS00265 MMJJ_RS00270: MMJJ_RS00270 - adenosylcobinamide-GDP ribazoletransferase, at 52,504 to 53,277 _RS00270 MMJJ_RS00275: MMJJ_RS00275 - coenzyme F420-0:L-glutamate ligase, at 53,331 to 54,077 _RS00275 Position (kb) 51 52 53Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 50.823 kb on + strand, within MMJJ_RS00255at 50.823 kb on + strand, within MMJJ_RS00255at 50.826 kb on - strand, within MMJJ_RS00255at 50.826 kb on - strand, within MMJJ_RS00255at 50.826 kb on - strand, within MMJJ_RS00255at 50.827 kb on + strand, within MMJJ_RS00255at 50.827 kb on + strand, within MMJJ_RS00255at 50.827 kb on + strand, within MMJJ_RS00255at 50.924 kb on + strand, within MMJJ_RS00255at 50.927 kb on - strand, within MMJJ_RS00255at 50.927 kb on - strand, within MMJJ_RS00255at 50.980 kb on - strand, within MMJJ_RS00255at 50.996 kb on - strand, within MMJJ_RS00255at 51.044 kb on - strand, within MMJJ_RS00255at 51.184 kb on - strand, within MMJJ_RS00255at 51.185 kb on + strand, within MMJJ_RS00255at 51.185 kb on + strand, within MMJJ_RS00255at 51.217 kb on - strand, within MMJJ_RS00255at 51.409 kb on - strandat 51.409 kb on - strandat 51.409 kb on - strandat 51.409 kb on - strandat 51.410 kb on + strandat 51.410 kb on + strandat 51.410 kb on + strandat 51.410 kb on + strandat 51.410 kb on + strandat 51.410 kb on + strandat 51.411 kb on - strandat 51.411 kb on - strandat 51.412 kb on + strandat 51.412 kb on + strandat 51.412 kb on + strandat 51.412 kb on + strandat 51.412 kb on + strandat 51.412 kb on + strandat 51.415 kb on + strandat 51.415 kb on + strandat 51.426 kb on + strandat 51.427 kb on - strandat 51.427 kb on - strandat 51.427 kb on - strandat 51.427 kb on - strandat 51.428 kb on + strandat 51.436 kb on - strandat 51.436 kb on - strandat 51.436 kb on - strandat 51.437 kb on + strandat 51.453 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.455 kb on - strandat 51.456 kb on + strandat 51.470 kb on + strandat 51.472 kb on + strandat 51.474 kb on - strandat 51.576 kb on + strand, within MMJJ_RS00260at 51.589 kb on - strand, within MMJJ_RS00260at 51.791 kb on - strandat 51.791 kb on - strandat 51.794 kb on + strandat 51.794 kb on + strandat 51.794 kb on + strandat 51.794 kb on + strandat 51.817 kb on + strandat 51.894 kb on + strand, within MMJJ_RS00265at 51.925 kb on + strand, within MMJJ_RS00265at 51.947 kb on - strand, within MMJJ_RS00265at 52.027 kb on - strand, within MMJJ_RS00265at 52.059 kb on - strand, within MMJJ_RS00265at 52.105 kb on + strand, within MMJJ_RS00265at 52.113 kb on - strand, within MMJJ_RS00265at 52.118 kb on - strand, within MMJJ_RS00265at 52.171 kb on + strand, within MMJJ_RS00265at 52.230 kb on - strand, within MMJJ_RS00265at 52.231 kb on + strand, within MMJJ_RS00265at 52.231 kb on + strand, within MMJJ_RS00265at 52.233 kb on + strand, within MMJJ_RS00265at 52.283 kb on + strand, within MMJJ_RS00265at 52.305 kb on + strand, within MMJJ_RS00265at 52.427 kb on - strandat 52.428 kb on + strandat 52.452 kb on + strandat 52.482 kb on - strandat 52.654 kb on + strand, within MMJJ_RS00270at 52.655 kb on - strand, within MMJJ_RS00270at 52.719 kb on + strand, within MMJJ_RS00270at 52.723 kb on + strand, within MMJJ_RS00270at 52.810 kb on + strand, within MMJJ_RS00270at 52.810 kb on + strand, within MMJJ_RS00270at 52.928 kb on + strand, within MMJJ_RS00270at 52.934 kb on - strand, within MMJJ_RS00270at 53.082 kb on + strandat 53.257 kb on - strandat 53.269 kb on + strandat 53.279 kb on - strandat 53.300 kb on + strandat 53.305 kb on - strandat 53.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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50,823 + MMJJ_RS00255 0.62 +2.8
50,823 + MMJJ_RS00255 0.62 +1.9
50,826 - MMJJ_RS00255 0.62 +0.6
50,826 - MMJJ_RS00255 0.62 -1.1
50,826 - MMJJ_RS00255 0.62 -1.4
50,827 + MMJJ_RS00255 0.63 +1.3
50,827 + MMJJ_RS00255 0.63 +1.9
50,827 + MMJJ_RS00255 0.63 +3.2
50,924 + MMJJ_RS00255 0.69 -0.9
50,927 - MMJJ_RS00255 0.69 -2.0
50,927 - MMJJ_RS00255 0.69 -0.6
50,980 - MMJJ_RS00255 0.73 +2.2
50,996 - MMJJ_RS00255 0.74 +1.0
51,044 - MMJJ_RS00255 0.77 -0.4
51,184 - MMJJ_RS00255 0.86 -3.6
51,185 + MMJJ_RS00255 0.86 +1.3
51,185 + MMJJ_RS00255 0.86 -1.5
51,217 - MMJJ_RS00255 0.88 +2.6
51,409 - -4.2
51,409 - +1.0
51,409 - +0.3
51,409 - -4.4
51,410 + +1.5
51,410 + -1.1
51,410 + -0.6
51,410 + +4.5
51,410 + -1.6
51,410 + -1.8
51,411 - -1.1
51,411 - -1.0
51,412 + -2.5
51,412 + -2.3
51,412 + -0.6
51,412 + +0.9
51,412 + -0.6
51,412 + -1.3
51,415 + -2.0
51,415 + -1.3
51,426 + +1.7
51,427 - -3.1
51,427 - -0.3
51,427 - +0.1
51,427 - -0.9
51,428 + -4.3
51,436 - -1.0
51,436 - -0.8
51,436 - -0.8
51,437 + -3.4
51,453 - -0.2
51,455 - -3.2
51,455 - -0.5
51,455 - -0.3
51,456 + -2.8
51,470 + -3.0
51,472 + -3.3
51,474 - -0.6
51,576 + MMJJ_RS00260 0.26 -2.0
51,589 - MMJJ_RS00260 0.31 -1.6
51,791 - -3.0
51,791 - -1.8
51,794 + -2.3
51,794 + -2.5
51,794 + -2.5
51,794 + -3.5
51,817 + -1.7
51,894 + MMJJ_RS00265 0.12 -3.6
51,925 + MMJJ_RS00265 0.17 -1.6
51,947 - MMJJ_RS00265 0.20 -4.3
52,027 - MMJJ_RS00265 0.32 -2.1
52,059 - MMJJ_RS00265 0.37 -1.6
52,105 + MMJJ_RS00265 0.43 -2.3
52,113 - MMJJ_RS00265 0.45 -2.4
52,118 - MMJJ_RS00265 0.45 -0.9
52,171 + MMJJ_RS00265 0.53 -3.6
52,230 - MMJJ_RS00265 0.62 -2.2
52,231 + MMJJ_RS00265 0.62 -3.7
52,231 + MMJJ_RS00265 0.62 -2.2
52,233 + MMJJ_RS00265 0.62 -2.9
52,283 + MMJJ_RS00265 0.70 -3.1
52,305 + MMJJ_RS00265 0.73 -1.5
52,427 - -2.1
52,428 + -1.9
52,452 + -1.1
52,482 - -1.7
52,654 + MMJJ_RS00270 0.19 -1.6
52,655 - MMJJ_RS00270 0.20 -2.2
52,719 + MMJJ_RS00270 0.28 -2.0
52,723 + MMJJ_RS00270 0.28 -2.8
52,810 + MMJJ_RS00270 0.40 -0.3
52,810 + MMJJ_RS00270 0.40 -2.5
52,928 + MMJJ_RS00270 0.55 -2.7
52,934 - MMJJ_RS00270 0.56 -1.1
53,082 + +0.1
53,257 - +4.9
53,269 + -2.1
53,279 - -0.4
53,300 + +1.2
53,305 - +2.6
53,309 - -1.1

Or see this region's nucleotide sequence