Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06900

Experiment: R2A with Magnesium sulfate 3.90625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Magnesium sulfate 3.90625 mM
1,483,094	+		LRK54_RS06890	0.61	-1.0
1,483,094	+		LRK54_RS06890	0.61	-0.1
1,483,094	+		LRK54_RS06890	0.61	-1.3
1,483,094	+		LRK54_RS06890	0.61	-3.2
1,483,094	+		LRK54_RS06890	0.61	+1.4
1,483,094	+		LRK54_RS06890	0.61	-0.9
1,483,094	+		LRK54_RS06890	0.61	-1.4
1,483,095	-		LRK54_RS06890	0.61	-0.4
1,483,095	-		LRK54_RS06890	0.61	-1.6
1,483,095	-		LRK54_RS06890	0.61	+0.3
1,483,095	-		LRK54_RS06890	0.61	+0.2
1,483,095	-		LRK54_RS06890	0.61	-0.3
1,483,095	-		LRK54_RS06890	0.61	+0.4
1,483,095	-		LRK54_RS06890	0.61	-0.3
1,483,095	-		LRK54_RS06890	0.61	+0.9
1,483,095	-		LRK54_RS06890	0.61	+1.1
1,483,095	-		LRK54_RS06890	0.61	-2.1
1,483,403	+		LRK54_RS06890	0.90	-0.4
1,483,403	+		LRK54_RS06890	0.90	+0.1
1,483,403	+		LRK54_RS06890	0.90	+0.4
1,483,403	+		LRK54_RS06890	0.90	-0.1
1,483,403	+		LRK54_RS06890	0.90	+0.0
1,483,403	+		LRK54_RS06890	0.90	-1.4
1,483,403	+		LRK54_RS06890	0.90	-0.2
1,483,403	+		LRK54_RS06890	0.90	-0.4
1,483,403	+		LRK54_RS06890	0.90	+0.2
1,483,403	+		LRK54_RS06890	0.90	+0.3
1,483,404	-		LRK54_RS06890	0.90	-1.3
1,483,404	-		LRK54_RS06890	0.90	-0.4
1,483,404	-		LRK54_RS06890	0.90	-2.0
1,483,404	-		LRK54_RS06890	0.90	-0.1
1,483,404	-		LRK54_RS06890	0.90	-1.2
1,483,404	-		LRK54_RS06890	0.90	+0.1
1,483,404	-		LRK54_RS06890	0.90	+0.9
1,483,404	-		LRK54_RS06890	0.90	+0.6
1,483,404	-		LRK54_RS06890	0.90	-0.1
1,483,404	-		LRK54_RS06890	0.90	+1.1
1,483,404	-		LRK54_RS06890	0.90	-1.1
1,483,553	+				-0.5
1,483,717	+		LRK54_RS06895	0.34	+1.0
1,483,718	-		LRK54_RS06895	0.34	+0.7
1,484,019	+				+1.0
1,484,020	-				-0.1
1,484,106	+		LRK54_RS06900	0.11	-0.6
1,484,106	+		LRK54_RS06900	0.11	-0.4
1,484,106	+		LRK54_RS06900	0.11	-2.0
1,484,106	+		LRK54_RS06900	0.11	+0.1
1,484,106	+		LRK54_RS06900	0.11	+0.8
1,484,106	+		LRK54_RS06900	0.11	-0.5
1,484,107	-		LRK54_RS06900	0.11	-0.1
1,484,107	-		LRK54_RS06900	0.11	+2.2
1,484,107	-		LRK54_RS06900	0.11	-0.6
1,484,107	-		LRK54_RS06900	0.11	-0.3
1,484,107	-		LRK54_RS06900	0.11	-0.8
1,484,107	-		LRK54_RS06900	0.11	-0.2
1,484,107	-		LRK54_RS06900	0.11	-2.8
1,484,107	-		LRK54_RS06900	0.11	+0.8
1,484,107	-		LRK54_RS06900	0.11	-0.7
1,484,107	-		LRK54_RS06900	0.11	-0.3
1,484,107	-		LRK54_RS06900	0.11	+0.0
1,484,166	+		LRK54_RS06900	0.17	-0.6
1,484,166	+		LRK54_RS06900	0.17	+0.2
1,484,166	+		LRK54_RS06900	0.17	-1.0
1,484,166	+		LRK54_RS06900	0.17	-0.0
1,484,167	-		LRK54_RS06900	0.17	+1.0
1,484,517	+		LRK54_RS06900	0.54	+0.7
1,484,517	+		LRK54_RS06900	0.54	+1.0
1,484,517	+		LRK54_RS06900	0.54	+2.4
1,484,517	+		LRK54_RS06900	0.54	-0.3
1,484,517	+		LRK54_RS06900	0.54	+0.8
1,484,517	+		LRK54_RS06900	0.54	+0.8
1,484,518	-		LRK54_RS06900	0.54	-0.8
1,484,731	+		LRK54_RS06900	0.77	-1.3
1,484,746	-		LRK54_RS06900	0.79	+0.5
1,484,820	+		LRK54_RS06900	0.86	+0.2
1,484,820	+		LRK54_RS06900	0.86	+0.5
1,484,820	+		LRK54_RS06900	0.86	-0.4
1,484,820	+		LRK54_RS06900	0.86	-0.9
1,484,820	+		LRK54_RS06900	0.86	-1.9
1,484,820	+		LRK54_RS06900	0.86	+1.6
1,484,820	+		LRK54_RS06900	0.86	+0.9
1,484,820	+		LRK54_RS06900	0.86	+0.0
1,484,820	+		LRK54_RS06900	0.86	-0.3
1,484,820	+		LRK54_RS06900	0.86	-0.8
1,484,820	+		LRK54_RS06900	0.86	-1.6
1,484,821	-		LRK54_RS06900	0.86	-0.0
1,484,821	-		LRK54_RS06900	0.86	-1.2
1,485,016	+				+0.1
1,485,129	+		LRK54_RS06905	0.18	-1.2
1,485,129	+		LRK54_RS06905	0.18	-2.6
1,485,129	+		LRK54_RS06905	0.18	-2.0
1,485,129	+		LRK54_RS06905	0.18	-2.7
1,485,129	+		LRK54_RS06905	0.18	-1.8
1,485,129	+		LRK54_RS06905	0.18	-0.4
1,485,129	+		LRK54_RS06905	0.18	-0.7
1,485,129	+		LRK54_RS06905	0.18	-0.7
1,485,129	+		LRK54_RS06905	0.18	-1.2
1,485,129	+		LRK54_RS06905	0.18	-2.3
1,485,129	+		LRK54_RS06905	0.18	-1.5
1,485,129	+		LRK54_RS06905	0.18	+0.9
1,485,129	+		LRK54_RS06905	0.18	+0.6
1,485,129	+		LRK54_RS06905	0.18	-1.2
1,485,129	+		LRK54_RS06905	0.18	-0.4
1,485,129	+		LRK54_RS06905	0.18	-1.0
1,485,129	+		LRK54_RS06905	0.18	-2.6
1,485,129	+		LRK54_RS06905	0.18	-1.6
1,485,129	+		LRK54_RS06905	0.18	-0.5
1,485,129	+		LRK54_RS06905	0.18	+0.6
1,485,129	+		LRK54_RS06905	0.18	-2.1
1,485,129	+		LRK54_RS06905	0.18	-1.6
1,485,129	+		LRK54_RS06905	0.18	-3.6
1,485,130	-		LRK54_RS06905	0.18	-1.2
1,485,130	-		LRK54_RS06905	0.18	-3.0
1,485,130	-		LRK54_RS06905	0.18	-1.0
1,485,130	-		LRK54_RS06905	0.18	-1.0
1,485,130	-		LRK54_RS06905	0.18	-0.4
1,485,130	-		LRK54_RS06905	0.18	-0.6
1,485,130	-		LRK54_RS06905	0.18	-0.4
1,485,130	-		LRK54_RS06905	0.18	-1.2
1,485,130	-		LRK54_RS06905	0.18	+0.0
1,485,130	-		LRK54_RS06905	0.18	-2.2
1,485,130	-		LRK54_RS06905	0.18	-2.9
1,485,130	-		LRK54_RS06905	0.18	-0.4
1,485,130	-		LRK54_RS06905	0.18	-1.8
1,485,130	-		LRK54_RS06905	0.18	-0.7
1,485,130	-		LRK54_RS06905	0.18	+1.6
1,485,130	-		LRK54_RS06905	0.18	-3.2
1,485,130	-		LRK54_RS06905	0.18	-0.5
1,485,130	-		LRK54_RS06905	0.18	-1.0
1,485,130	-		LRK54_RS06905	0.18	-1.4
1,485,130	-		LRK54_RS06905	0.18	-3.6
1,485,130	-		LRK54_RS06905	0.18	-0.4
1,485,130	-		LRK54_RS06905	0.18	-1.1
1,485,130	-		LRK54_RS06905	0.18	-2.9
1,485,261	+		LRK54_RS06905	0.42	-1.2
1,485,261	+		LRK54_RS06905	0.42	+0.0
1,485,261	+		LRK54_RS06905	0.42	-1.8
1,485,261	+		LRK54_RS06905	0.42	-1.3
1,485,261	+		LRK54_RS06905	0.42	-1.4
1,485,261	+		LRK54_RS06905	0.42	-1.1
1,485,261	+		LRK54_RS06905	0.42	-2.5
1,485,262	-		LRK54_RS06905	0.43	-2.7
1,485,262	-		LRK54_RS06905	0.43	-1.3
1,485,262	-		LRK54_RS06905	0.43	-2.6
1,485,262	-		LRK54_RS06905	0.43	-1.8
1,485,262	-		LRK54_RS06905	0.43	-1.2
1,485,262	-		LRK54_RS06905	0.43	-1.4
1,485,262	-		LRK54_RS06905	0.43	-1.4
1,485,450	+		LRK54_RS06905	0.78	-0.7
1,485,451	-		LRK54_RS06905	0.78	-1.7
1,485,656	+				-1.0
1,485,674	+				-1.8
1,485,674	+				-2.0
1,485,674	+				-2.5
1,485,674	+				-2.3
1,485,674	+				-2.2
1,485,674	+				-0.7
1,485,675	-				-1.6
1,485,675	-				-3.0
1,485,675	-				-0.7
1,485,677	+				-1.0
1,485,677	+				-0.1
1,485,677	+				-1.1
1,485,677	+				-2.3
1,485,677	+				-3.5
1,485,677	+				-1.6
1,485,677	+				-1.8
1,485,677	+				-2.2
1,485,677	+				-2.2
1,485,677	+				-1.0
1,485,677	+				-1.2
1,485,677	+				-1.7
1,485,677	+				-3.4
1,485,677	+				-3.6
1,485,677	+				+1.6
1,485,677	+				-4.0
1,485,678	-				-1.2
1,485,678	-				+0.2
1,485,678	-				-2.6
1,485,678	-				+0.0
1,485,678	-				-3.2
1,485,678	-				-2.5
1,485,678	-				-0.7
1,485,678	-				-1.0
1,485,678	-				-1.8
1,485,678	-				-4.1
1,485,678	-				-1.2
1,485,678	-				-2.8
1,485,860	+		LRK54_RS06910	0.25	-1.6
1,485,860	+		LRK54_RS06910	0.25	-1.2
1,485,860	+		LRK54_RS06910	0.25	-1.6
1,485,860	+		LRK54_RS06910	0.25	-0.3
1,485,861	-		LRK54_RS06910	0.25	-0.6
1,485,861	-		LRK54_RS06910	0.25	-1.7
1,485,861	-		LRK54_RS06910	0.25	-1.0
1,485,861	-		LRK54_RS06910	0.25	-1.3
1,485,861	-		LRK54_RS06910	0.25	-2.0
1,485,861	-		LRK54_RS06910	0.25	-0.7
1,485,861	-		LRK54_RS06910	0.25	-0.4
1,485,861	-		LRK54_RS06910	0.25	-1.4
1,485,881	+		LRK54_RS06910	0.27	-1.2
1,485,881	+		LRK54_RS06910	0.27	-1.7
1,485,881	+		LRK54_RS06910	0.27	-2.6
1,485,882	-		LRK54_RS06910	0.27	+0.6
1,485,908	+		LRK54_RS06910	0.29	-1.0
1,485,908	+		LRK54_RS06910	0.29	-2.1
1,485,909	-		LRK54_RS06910	0.29	-1.5
1,485,909	-		LRK54_RS06910	0.29	-0.7
1,485,909	-		LRK54_RS06910	0.29	-2.6
1,485,909	-		LRK54_RS06910	0.29	-4.6
1,485,920	+		LRK54_RS06910	0.30	-1.7
1,485,920	+		LRK54_RS06910	0.30	-1.4
1,485,920	+		LRK54_RS06910	0.30	+0.0
1,485,920	+		LRK54_RS06910	0.30	+0.6
1,485,920	+		LRK54_RS06910	0.30	-3.2
1,485,920	+		LRK54_RS06910	0.30	+1.6
1,485,920	+		LRK54_RS06910	0.30	-1.4
1,485,920	+		LRK54_RS06910	0.30	-2.0
1,485,920	+		LRK54_RS06910	0.30	-0.3
1,485,920	+		LRK54_RS06910	0.30	-2.2
1,485,920	+		LRK54_RS06910	0.30	-0.7
1,485,920	+		LRK54_RS06910	0.30	-2.6
1,485,921	-		LRK54_RS06910	0.30	-1.2
1,485,921	-		LRK54_RS06910	0.30	-1.6
1,485,921	-		LRK54_RS06910	0.30	-0.4
1,485,921	-		LRK54_RS06910	0.30	-1.1
1,485,921	-		LRK54_RS06910	0.30	-1.8
1,485,921	-		LRK54_RS06910	0.30	-3.4
1,485,921	-		LRK54_RS06910	0.30	-0.1
1,485,921	-		LRK54_RS06910	0.30	-2.8
1,485,921	-		LRK54_RS06910	0.30	-3.0
1,485,921	-		LRK54_RS06910	0.30	-3.8