Experiment: R2A with Magnesium sulfate 3.90625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02540 and LRK54_RS02545 are separated by 14 nucleotides LRK54_RS02545 and LRK54_RS02550 are separated by 282 nucleotides LRK54_RS02550 and LRK54_RS02555 are separated by 151 nucleotides
LRK54_RS02540: LRK54_RS02540 - 30S ribosomal protein S18, at 549,821 to 550,051
_RS02540
LRK54_RS02545: LRK54_RS02545 - 30S ribosomal protein S6, at 550,066 to 550,488
_RS02545
LRK54_RS02550: LRK54_RS02550 - iron-sulfur cluster assembly accessory protein, at 550,771 to 551,097
_RS02550
LRK54_RS02555: LRK54_RS02555 - asparagine--tRNA ligase, at 551,249 to 552,664
_RS02555
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 549.790 kb on + strand at 549.790 kb on + strand at 549.804 kb on + strand at 549.804 kb on + strand at 549.804 kb on + strand at 549.844 kb on - strand, within LRK54_RS02540 at 550.600 kb on - strand at 550.600 kb on - strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.643 kb on + strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.644 kb on - strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.760 kb on + strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.761 kb on - strand at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.979 kb on + strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 550.980 kb on - strand, within LRK54_RS02550 at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.154 kb on + strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.155 kb on - strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.159 kb on + strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.160 kb on - strand at 551.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Magnesium sulfate 3.90625 mM remove 549,790 + -0.4 549,790 + -0.7 549,804 + -1.2 549,804 + -0.4 549,804 + +0.1 549,844 - LRK54_RS02540 0.10 -2.2 550,600 - -0.4 550,600 - -0.9 550,643 + -1.3 550,643 + -0.4 550,643 + -0.5 550,643 + -2.6 550,644 - -0.3 550,644 - -1.0 550,644 - -0.8 550,644 - +0.3 550,644 - +0.9 550,760 + -0.0 550,760 + -0.7 550,760 + -0.4 550,760 + -0.9 550,760 + +0.6 550,760 + -0.1 550,760 + -0.6 550,760 + -1.0 550,761 - +1.3 550,761 - +0.3 550,761 - +0.5 550,761 - +0.9 550,761 - -0.3 550,761 - -1.4 550,761 - -0.2 550,761 - -1.2 550,761 - -0.5 550,761 - +0.6 550,761 - -0.4 550,761 - -1.3 550,761 - +0.2 550,761 - -0.9 550,761 - -0.1 550,761 - -0.1 550,761 - +0.1 550,979 + LRK54_RS02550 0.64 -2.5 550,979 + LRK54_RS02550 0.64 +0.1 550,979 + LRK54_RS02550 0.64 -2.1 550,979 + LRK54_RS02550 0.64 -0.9 550,979 + LRK54_RS02550 0.64 -2.2 550,980 - LRK54_RS02550 0.64 -0.4 550,980 - LRK54_RS02550 0.64 -3.2 550,980 - LRK54_RS02550 0.64 +0.6 550,980 - LRK54_RS02550 0.64 -0.4 550,980 - LRK54_RS02550 0.64 -1.8 550,980 - LRK54_RS02550 0.64 -2.1 550,980 - LRK54_RS02550 0.64 -0.0 550,980 - LRK54_RS02550 0.64 +0.1 551,154 + -0.2 551,154 + -0.9 551,154 + +0.6 551,154 + +0.4 551,154 + +0.6 551,154 + -0.4 551,154 + -1.4 551,154 + -1.3 551,154 + -2.2 551,154 + -1.8 551,154 + -1.6 551,154 + -1.5 551,154 + +0.1 551,154 + -1.7 551,154 + -1.5 551,154 + -0.4 551,154 + -2.7 551,154 + +1.1 551,154 + -0.2 551,154 + -0.7 551,154 + +0.6 551,154 + -1.7 551,154 + -2.9 551,154 + -0.7 551,154 + -1.2 551,154 + -1.2 551,154 + -0.4 551,154 + -0.4 551,155 - +0.1 551,155 - -0.2 551,155 - +1.1 551,155 - +2.5 551,155 - +0.2 551,155 - -0.4 551,155 - +0.6 551,155 - -0.4 551,155 - +1.5 551,155 - +0.7 551,155 - +0.8 551,155 - +0.1 551,155 - +1.3 551,155 - +0.8 551,155 - +0.1 551,155 - +1.3 551,155 - +0.0 551,155 - -1.2 551,155 - +0.6 551,155 - -1.2 551,155 - +0.2 551,155 - +0.1 551,155 - -0.1 551,155 - +0.2 551,155 - -0.4 551,155 - +1.1 551,159 + +0.6 551,159 + -1.5 551,159 + -2.4 551,159 + +2.2 551,159 + +0.3 551,159 + -1.4 551,159 + -1.2 551,159 + -0.9 551,159 + -0.7 551,159 + -0.9 551,159 + +2.2 551,159 + -1.5 551,159 + -1.4 551,159 + +0.1 551,159 + +0.2 551,159 + -0.9 551,159 + -3.7 551,159 + -0.7 551,159 + -1.4 551,160 - -0.3 551,160 - -0.5 551,160 - +0.1 551,160 - +1.6 551,160 - -0.2 551,160 - +0.5 551,160 - -0.2 551,160 - -1.5 551,160 - +0.6 551,160 - +0.1 551,160 - -1.1 551,160 - -0.3 551,160 - +2.6 551,160 - -1.7 551,160 - -0.1 551,160 - +1.6 551,160 - -0.9 551,160 - -0.5 551,160 - -1.9 551,160 - +0.7 551,160 - +0.0 551,160 - -2.1 551,160 - +1.6 551,160 - +0.6 551,160 - -0.3 551,160 - -1.8 551,160 - +1.1 551,160 - +2.2 551,160 - -0.2 551,160 - +0.9 551,160 - +1.6 551,271 + +0.5
Or see this region's nucleotide sequence