Experiment: Polymyxin B sulfate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3746 and Ga0059261_3747 are separated by 5 nucleotides Ga0059261_3747 and Ga0059261_3748 are separated by 114 nucleotides Ga0059261_3748 and Ga0059261_3749 are separated by 114 nucleotides
Ga0059261_3746: Ga0059261_3746 - ribosomal protein S5, bacterial/organelle type, at 3,848,871 to 3,849,584
_3746
Ga0059261_3747: Ga0059261_3747 - ribosomal protein L30, bacterial/organelle, at 3,849,590 to 3,849,787
_3747
Ga0059261_3748: Ga0059261_3748 - ribosomal protein L15, bacterial/organelle, at 3,849,902 to 3,850,438
_3748
Ga0059261_3749: Ga0059261_3749 - protein translocase subunit secY/sec61 alpha, at 3,850,553 to 3,851,917
_3749
Position (kb)
3849
3850
3851 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3850.372 kb on + strand, within Ga0059261_3748 at 3850.372 kb on + strand, within Ga0059261_3748 at 3850.372 kb on + strand, within Ga0059261_3748 at 3850.372 kb on + strand, within Ga0059261_3748 at 3850.372 kb on + strand, within Ga0059261_3748 at 3850.372 kb on + strand at 3850.373 kb on - strand at 3850.373 kb on - strand, within Ga0059261_3748 at 3850.373 kb on - strand at 3850.373 kb on - strand, within Ga0059261_3748
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml remove 3,850,372 + Ga0059261_3748 0.88 -1.9 3,850,372 + Ga0059261_3748 0.88 -0.5 3,850,372 + Ga0059261_3748 0.88 -1.1 3,850,372 + Ga0059261_3748 0.88 -3.7 3,850,372 + Ga0059261_3748 0.88 -1.2 3,850,372 + -0.7 3,850,373 - -1.5 3,850,373 - Ga0059261_3748 0.88 -1.9 3,850,373 - +0.9 3,850,373 - Ga0059261_3748 0.88 -0.6
Or see this region's nucleotide sequence