Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3207

Experiment: Polymyxin B sulfate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3206 and Ga0059261_3207 are separated by 124 nucleotidesGa0059261_3207 and Ga0059261_3208 are separated by 68 nucleotidesGa0059261_3208 and Ga0059261_3209 are separated by 55 nucleotides Ga0059261_3206: Ga0059261_3206 - ornithine carbamoyltransferase, at 3,341,421 to 3,342,344 _3206 Ga0059261_3207: Ga0059261_3207 - Disulfide bond chaperones of the HSP33 family, at 3,342,469 to 3,343,380 _3207 Ga0059261_3208: Ga0059261_3208 - hypothetical protein, at 3,343,449 to 3,343,841 _3208 Ga0059261_3209: Ga0059261_3209 - queuosine biosynthesis protein QueC, at 3,343,897 to 3,344,586 _3209 Position (kb) 3342 3343 3344Strain fitness (log2 ratio) -2 -1 0 1 2at 3341.725 kb on - strand, within Ga0059261_3206at 3341.743 kb on + strand, within Ga0059261_3206at 3341.744 kb on - strand, within Ga0059261_3206at 3341.744 kb on - strand, within Ga0059261_3206at 3341.744 kb on - strand, within Ga0059261_3206at 3341.744 kb on - strand, within Ga0059261_3206at 3341.784 kb on + strand, within Ga0059261_3206at 3341.785 kb on - strand, within Ga0059261_3206at 3341.785 kb on - strand, within Ga0059261_3206at 3341.785 kb on - strand, within Ga0059261_3206at 3342.086 kb on + strand, within Ga0059261_3206at 3342.150 kb on + strand, within Ga0059261_3206at 3342.150 kb on + strand, within Ga0059261_3206at 3342.462 kb on + strandat 3342.462 kb on + strandat 3342.462 kb on + strandat 3342.463 kb on - strandat 3342.463 kb on - strandat 3342.463 kb on - strandat 3342.463 kb on - strandat 3342.684 kb on + strand, within Ga0059261_3207at 3342.744 kb on + strand, within Ga0059261_3207at 3342.744 kb on + strand, within Ga0059261_3207at 3342.745 kb on - strandat 3342.745 kb on - strand, within Ga0059261_3207at 3342.745 kb on - strand, within Ga0059261_3207at 3342.745 kb on - strand, within Ga0059261_3207at 3342.745 kb on - strand, within Ga0059261_3207at 3342.766 kb on + strand, within Ga0059261_3207at 3342.767 kb on - strand, within Ga0059261_3207at 3342.841 kb on + strand, within Ga0059261_3207at 3342.841 kb on + strand, within Ga0059261_3207at 3342.842 kb on - strand, within Ga0059261_3207at 3342.883 kb on + strand, within Ga0059261_3207at 3343.255 kb on + strand, within Ga0059261_3207at 3343.255 kb on + strand, within Ga0059261_3207at 3343.255 kb on + strand, within Ga0059261_3207at 3343.256 kb on - strand, within Ga0059261_3207at 3343.256 kb on - strand, within Ga0059261_3207at 3343.256 kb on - strand, within Ga0059261_3207at 3343.257 kb on + strand, within Ga0059261_3207at 3343.257 kb on + strand, within Ga0059261_3207at 3343.390 kb on + strandat 3343.390 kb on + strandat 3343.391 kb on - strandat 3343.402 kb on + strandat 3343.402 kb on + strandat 3343.402 kb on + strandat 3343.403 kb on - strandat 3343.403 kb on - strandat 3343.434 kb on + strandat 3343.434 kb on + strandat 3343.434 kb on + strandat 3343.435 kb on - strandat 3343.435 kb on - strandat 3343.472 kb on + strandat 3343.507 kb on - strand, within Ga0059261_3208at 3343.622 kb on - strand, within Ga0059261_3208at 3343.809 kb on + strandat 3343.809 kb on + strandat 3343.809 kb on + strandat 3343.809 kb on + strandat 3343.810 kb on - strandat 3343.810 kb on - strandat 3344.008 kb on + strand, within Ga0059261_3209at 3344.008 kb on + strand, within Ga0059261_3209at 3344.009 kb on - strandat 3344.009 kb on - strand, within Ga0059261_3209at 3344.011 kb on - strand, within Ga0059261_3209at 3344.011 kb on - strand, within Ga0059261_3209at 3344.011 kb on - strand, within Ga0059261_3209at 3344.011 kb on - strand, within Ga0059261_3209at 3344.027 kb on + strand, within Ga0059261_3209at 3344.027 kb on + strand, within Ga0059261_3209at 3344.027 kb on + strand, within Ga0059261_3209at 3344.027 kb on + strand, within Ga0059261_3209at 3344.027 kb on + strandat 3344.028 kb on - strand, within Ga0059261_3209at 3344.028 kb on - strand, within Ga0059261_3209at 3344.028 kb on - strand, within Ga0059261_3209at 3344.028 kb on - strand, within Ga0059261_3209at 3344.028 kb on - strand, within Ga0059261_3209at 3344.081 kb on + strand, within Ga0059261_3209at 3344.081 kb on + strand, within Ga0059261_3209at 3344.081 kb on + strand, within Ga0059261_3209at 3344.082 kb on - strand, within Ga0059261_3209at 3344.082 kb on - strand, within Ga0059261_3209at 3344.082 kb on - strand, within Ga0059261_3209at 3344.082 kb on - strand, within Ga0059261_3209at 3344.082 kb on - strand, within Ga0059261_3209at 3344.082 kb on - strand, within Ga0059261_3209at 3344.166 kb on + strand, within Ga0059261_3209at 3344.167 kb on - strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.179 kb on + strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.180 kb on - strand, within Ga0059261_3209at 3344.254 kb on + strand, within Ga0059261_3209at 3344.254 kb on + strand, within Ga0059261_3209at 3344.254 kb on + strand, within Ga0059261_3209at 3344.254 kb on + strand, within Ga0059261_3209at 3344.254 kb on + strand, within Ga0059261_3209at 3344.254 kb on + strand, within Ga0059261_3209at 3344.255 kb on - strand, within Ga0059261_3209at 3344.255 kb on - strand, within Ga0059261_3209at 3344.255 kb on - strand, within Ga0059261_3209at 3344.255 kb on - strand, within Ga0059261_3209at 3344.255 kb on - strand, within Ga0059261_3209at 3344.256 kb on + strand, within Ga0059261_3209at 3344.256 kb on + strand, within Ga0059261_3209at 3344.279 kb on - strand, within Ga0059261_3209at 3344.279 kb on - strand, within Ga0059261_3209at 3344.358 kb on - strand, within Ga0059261_3209

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml
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3,341,725 - Ga0059261_3206 0.33 -0.2
3,341,743 + Ga0059261_3206 0.35 +0.0
3,341,744 - Ga0059261_3206 0.35 +0.6
3,341,744 - Ga0059261_3206 0.35 -0.4
3,341,744 - Ga0059261_3206 0.35 +0.1
3,341,744 - Ga0059261_3206 0.35 +0.1
3,341,784 + Ga0059261_3206 0.39 +0.0
3,341,785 - Ga0059261_3206 0.39 -0.2
3,341,785 - Ga0059261_3206 0.39 -1.6
3,341,785 - Ga0059261_3206 0.39 +1.0
3,342,086 + Ga0059261_3206 0.72 +0.1
3,342,150 + Ga0059261_3206 0.79 -0.9
3,342,150 + Ga0059261_3206 0.79 -0.6
3,342,462 + +0.2
3,342,462 + -0.1
3,342,462 + +1.3
3,342,463 - -0.3
3,342,463 - +0.4
3,342,463 - -1.0
3,342,463 - -0.2
3,342,684 + Ga0059261_3207 0.24 +0.3
3,342,744 + Ga0059261_3207 0.30 -0.6
3,342,744 + Ga0059261_3207 0.30 -2.2
3,342,745 - -0.0
3,342,745 - Ga0059261_3207 0.30 +0.7
3,342,745 - Ga0059261_3207 0.30 -0.8
3,342,745 - Ga0059261_3207 0.30 -1.2
3,342,745 - Ga0059261_3207 0.30 -0.3
3,342,766 + Ga0059261_3207 0.33 -0.6
3,342,767 - Ga0059261_3207 0.33 -0.2
3,342,841 + Ga0059261_3207 0.41 -1.7
3,342,841 + Ga0059261_3207 0.41 +1.0
3,342,842 - Ga0059261_3207 0.41 +0.4
3,342,883 + Ga0059261_3207 0.45 -0.2
3,343,255 + Ga0059261_3207 0.86 +0.1
3,343,255 + Ga0059261_3207 0.86 +1.3
3,343,255 + Ga0059261_3207 0.86 -1.3
3,343,256 - Ga0059261_3207 0.86 -1.5
3,343,256 - Ga0059261_3207 0.86 -1.3
3,343,256 - Ga0059261_3207 0.86 -0.2
3,343,257 + Ga0059261_3207 0.86 -0.2
3,343,257 + Ga0059261_3207 0.86 -1.1
3,343,390 + -0.5
3,343,390 + -0.2
3,343,391 - +0.4
3,343,402 + -0.7
3,343,402 + +0.4
3,343,402 + +0.3
3,343,403 - -0.0
3,343,403 - +1.1
3,343,434 + -1.1
3,343,434 + +0.1
3,343,434 + -1.1
3,343,435 - -0.1
3,343,435 - +0.5
3,343,472 + +0.0
3,343,507 - Ga0059261_3208 0.15 +0.1
3,343,622 - Ga0059261_3208 0.44 -0.3
3,343,809 + +0.1
3,343,809 + -0.7
3,343,809 + +0.1
3,343,809 + -0.4
3,343,810 - -0.4
3,343,810 - -0.5
3,344,008 + Ga0059261_3209 0.16 +0.2
3,344,008 + Ga0059261_3209 0.16 -0.2
3,344,009 - -0.6
3,344,009 - Ga0059261_3209 0.16 -0.3
3,344,011 - Ga0059261_3209 0.17 -0.6
3,344,011 - Ga0059261_3209 0.17 -0.0
3,344,011 - Ga0059261_3209 0.17 -0.8
3,344,011 - Ga0059261_3209 0.17 -1.1
3,344,027 + Ga0059261_3209 0.19 -0.5
3,344,027 + Ga0059261_3209 0.19 -0.5
3,344,027 + Ga0059261_3209 0.19 +0.0
3,344,027 + Ga0059261_3209 0.19 +0.7
3,344,027 + +0.6
3,344,028 - Ga0059261_3209 0.19 -2.0
3,344,028 - Ga0059261_3209 0.19 +0.1
3,344,028 - Ga0059261_3209 0.19 -1.7
3,344,028 - Ga0059261_3209 0.19 +1.6
3,344,028 - Ga0059261_3209 0.19 +0.7
3,344,081 + Ga0059261_3209 0.27 -0.5
3,344,081 + Ga0059261_3209 0.27 -0.3
3,344,081 + Ga0059261_3209 0.27 -0.0
3,344,082 - Ga0059261_3209 0.27 -1.2
3,344,082 - Ga0059261_3209 0.27 -0.5
3,344,082 - Ga0059261_3209 0.27 +0.2
3,344,082 - Ga0059261_3209 0.27 -0.0
3,344,082 - Ga0059261_3209 0.27 -2.3
3,344,082 - Ga0059261_3209 0.27 -1.2
3,344,166 + Ga0059261_3209 0.39 +0.0
3,344,167 - Ga0059261_3209 0.39 -0.2
3,344,179 + Ga0059261_3209 0.41 -0.6
3,344,179 + Ga0059261_3209 0.41 -0.8
3,344,179 + Ga0059261_3209 0.41 +0.7
3,344,179 + Ga0059261_3209 0.41 -0.6
3,344,179 + Ga0059261_3209 0.41 -2.0
3,344,179 + Ga0059261_3209 0.41 +0.0
3,344,179 + Ga0059261_3209 0.41 +0.2
3,344,179 + Ga0059261_3209 0.41 +0.7
3,344,179 + Ga0059261_3209 0.41 -0.0
3,344,179 + Ga0059261_3209 0.41 -0.4
3,344,179 + Ga0059261_3209 0.41 -0.0
3,344,179 + Ga0059261_3209 0.41 +0.8
3,344,180 - Ga0059261_3209 0.41 -0.7
3,344,180 - Ga0059261_3209 0.41 -0.7
3,344,180 - Ga0059261_3209 0.41 +0.0
3,344,180 - Ga0059261_3209 0.41 -1.0
3,344,180 - Ga0059261_3209 0.41 +0.7
3,344,180 - Ga0059261_3209 0.41 -0.1
3,344,180 - Ga0059261_3209 0.41 -1.6
3,344,180 - Ga0059261_3209 0.41 -0.9
3,344,180 - Ga0059261_3209 0.41 -0.2
3,344,254 + Ga0059261_3209 0.52 -1.2
3,344,254 + Ga0059261_3209 0.52 -0.9
3,344,254 + Ga0059261_3209 0.52 -0.4
3,344,254 + Ga0059261_3209 0.52 +0.2
3,344,254 + Ga0059261_3209 0.52 +0.6
3,344,254 + Ga0059261_3209 0.52 -0.3
3,344,255 - Ga0059261_3209 0.52 -0.6
3,344,255 - Ga0059261_3209 0.52 -0.9
3,344,255 - Ga0059261_3209 0.52 +0.8
3,344,255 - Ga0059261_3209 0.52 -0.6
3,344,255 - Ga0059261_3209 0.52 +0.0
3,344,256 + Ga0059261_3209 0.52 +0.3
3,344,256 + Ga0059261_3209 0.52 +1.8
3,344,279 - Ga0059261_3209 0.55 -1.8
3,344,279 - Ga0059261_3209 0.55 -2.0
3,344,358 - Ga0059261_3209 0.67 -0.0

Or see this region's nucleotide sequence