Experiment: Polymyxin B sulfate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_2284 and Ga0059261_2285 are separated by 112 nucleotides Ga0059261_2285 and Ga0059261_2286 overlap by 4 nucleotides
Ga0059261_2284: Ga0059261_2284 - lysyl-tRNA synthetase, class I (EC 6.1.1.6), at 2,388,060 to 2,389,637
_2284
Ga0059261_2285: Ga0059261_2285 - Fe2+ transport system protein A, at 2,389,750 to 2,389,998
_2285
Ga0059261_2286: Ga0059261_2286 - Fe2+ transport system protein B, at 2,389,995 to 2,391,839
_2286
Position (kb)
2389
2390 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2389.720 kb on + strand at 2389.749 kb on + strand at 2389.749 kb on + strand at 2389.784 kb on + strand, within Ga0059261_2285 at 2389.784 kb on + strand, within Ga0059261_2285 at 2389.784 kb on + strand, within Ga0059261_2285 at 2390.094 kb on + strand at 2390.095 kb on - strand at 2390.095 kb on - strand at 2390.181 kb on + strand, within Ga0059261_2286 at 2390.182 kb on - strand, within Ga0059261_2286 at 2390.230 kb on + strand, within Ga0059261_2286 at 2390.231 kb on - strand, within Ga0059261_2286 at 2390.231 kb on - strand, within Ga0059261_2286 at 2390.910 kb on + strand, within Ga0059261_2286 at 2390.910 kb on + strand, within Ga0059261_2286 at 2390.910 kb on + strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.911 kb on - strand at 2390.911 kb on - strand, within Ga0059261_2286 at 2390.912 kb on + strand, within Ga0059261_2286 at 2390.913 kb on - strand at 2390.913 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml remove 2,389,720 + +2.1 2,389,749 + -0.6 2,389,749 + +0.0 2,389,784 + Ga0059261_2285 0.14 -0.9 2,389,784 + Ga0059261_2285 0.14 +0.2 2,389,784 + Ga0059261_2285 0.14 -1.9 2,390,094 + -1.1 2,390,095 - -1.8 2,390,095 - -1.1 2,390,181 + Ga0059261_2286 0.10 -0.5 2,390,182 - Ga0059261_2286 0.10 +0.6 2,390,230 + Ga0059261_2286 0.13 -0.4 2,390,231 - Ga0059261_2286 0.13 -1.9 2,390,231 - Ga0059261_2286 0.13 +1.6 2,390,910 + Ga0059261_2286 0.50 +0.2 2,390,910 + Ga0059261_2286 0.50 -1.8 2,390,910 + Ga0059261_2286 0.50 -0.1 2,390,911 - Ga0059261_2286 0.50 -1.1 2,390,911 - Ga0059261_2286 0.50 +0.6 2,390,911 - Ga0059261_2286 0.50 +0.5 2,390,911 - Ga0059261_2286 0.50 +0.2 2,390,911 - Ga0059261_2286 0.50 -1.9 2,390,911 - Ga0059261_2286 0.50 -1.8 2,390,911 - +2.8 2,390,911 - Ga0059261_2286 0.50 +2.2 2,390,912 + Ga0059261_2286 0.50 +0.6 2,390,913 - -1.4 2,390,913 - -1.4
Or see this region's nucleotide sequence