Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2266

Experiment: Polymyxin B sulfate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2265 and Ga0059261_2266 are separated by 179 nucleotidesGa0059261_2266 and Ga0059261_2267 are separated by 22 nucleotidesGa0059261_2267 and Ga0059261_2268 are separated by 41 nucleotides Ga0059261_2265: Ga0059261_2265 - phosphoserine aminotransferase apoenzyme (EC 2.6.1.52), at 2,368,615 to 2,369,751 _2265 Ga0059261_2266: Ga0059261_2266 - Uncharacterized protein conserved in bacteria, at 2,369,931 to 2,370,611 _2266 Ga0059261_2267: Ga0059261_2267 - Predicted Rossmann fold nucleotide-binding protein, at 2,370,634 to 2,371,503 _2267 Ga0059261_2268: Ga0059261_2268 - Cytochrome c2, at 2,371,545 to 2,372,180 _2268 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2369.740 kb on + strandat 2369.740 kb on + strandat 2369.740 kb on + strandat 2369.740 kb on + strandat 2369.814 kb on - strandat 2369.860 kb on + strandat 2369.860 kb on + strandat 2369.861 kb on - strandat 2369.869 kb on + strandat 2369.869 kb on + strandat 2369.869 kb on + strandat 2369.870 kb on - strandat 2369.870 kb on - strandat 2369.919 kb on - strandat 2369.936 kb on + strandat 2369.937 kb on - strandat 2370.144 kb on + strand, within Ga0059261_2266at 2370.144 kb on + strand, within Ga0059261_2266at 2370.144 kb on + strandat 2370.145 kb on - strand, within Ga0059261_2266at 2370.330 kb on + strand, within Ga0059261_2266at 2370.330 kb on + strand, within Ga0059261_2266at 2370.330 kb on + strand, within Ga0059261_2266at 2370.330 kb on + strand, within Ga0059261_2266at 2370.330 kb on + strand, within Ga0059261_2266at 2370.330 kb on + strand, within Ga0059261_2266at 2370.331 kb on - strand, within Ga0059261_2266at 2370.331 kb on - strand, within Ga0059261_2266at 2370.331 kb on - strand, within Ga0059261_2266at 2370.331 kb on - strand, within Ga0059261_2266at 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.550 kb on - strandat 2370.550 kb on - strandat 2370.550 kb on - strandat 2370.550 kb on - strandat 2370.550 kb on - strandat 2370.551 kb on + strandat 2370.552 kb on - strandat 2370.552 kb on - strandat 2370.622 kb on + strandat 2370.622 kb on + strandat 2370.622 kb on + strandat 2370.623 kb on - strandat 2370.623 kb on - strandat 2370.736 kb on + strand, within Ga0059261_2267at 2370.737 kb on - strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.865 kb on + strand, within Ga0059261_2267at 2370.866 kb on - strand, within Ga0059261_2267at 2370.866 kb on - strand, within Ga0059261_2267at 2370.866 kb on - strand, within Ga0059261_2267at 2370.866 kb on - strand, within Ga0059261_2267at 2370.973 kb on + strand, within Ga0059261_2267at 2370.973 kb on + strand, within Ga0059261_2267at 2370.974 kb on - strand, within Ga0059261_2267at 2370.974 kb on - strand, within Ga0059261_2267at 2370.974 kb on - strand, within Ga0059261_2267at 2370.974 kb on - strand, within Ga0059261_2267at 2370.976 kb on + strand, within Ga0059261_2267at 2370.976 kb on + strand, within Ga0059261_2267at 2370.976 kb on + strand, within Ga0059261_2267at 2370.976 kb on + strand, within Ga0059261_2267at 2370.976 kb on + strand, within Ga0059261_2267at 2370.976 kb on + strand, within Ga0059261_2267at 2370.976 kb on + strand, within Ga0059261_2267at 2370.977 kb on - strand, within Ga0059261_2267at 2370.977 kb on - strand, within Ga0059261_2267at 2370.977 kb on - strand, within Ga0059261_2267at 2370.977 kb on - strand, within Ga0059261_2267at 2370.977 kb on - strand, within Ga0059261_2267at 2371.015 kb on + strand, within Ga0059261_2267at 2371.027 kb on - strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.168 kb on + strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.169 kb on - strand, within Ga0059261_2267at 2371.201 kb on + strand, within Ga0059261_2267at 2371.201 kb on + strand, within Ga0059261_2267at 2371.201 kb on + strand, within Ga0059261_2267at 2371.202 kb on - strand, within Ga0059261_2267at 2371.202 kb on - strand, within Ga0059261_2267at 2371.202 kb on - strand, within Ga0059261_2267at 2371.346 kb on - strand, within Ga0059261_2267at 2371.346 kb on - strand, within Ga0059261_2267at 2371.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml
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2,369,740 + -1.7
2,369,740 + +0.3
2,369,740 + +0.6
2,369,740 + -0.6
2,369,814 - -0.2
2,369,860 + -0.6
2,369,860 + -0.4
2,369,861 - +1.0
2,369,869 + +0.1
2,369,869 + -0.6
2,369,869 + -0.5
2,369,870 - -0.5
2,369,870 - +0.6
2,369,919 - -0.6
2,369,936 + -0.7
2,369,937 - -0.0
2,370,144 + Ga0059261_2266 0.31 +0.1
2,370,144 + Ga0059261_2266 0.31 -0.3
2,370,144 + +0.9
2,370,145 - Ga0059261_2266 0.31 -0.2
2,370,330 + Ga0059261_2266 0.59 +0.5
2,370,330 + Ga0059261_2266 0.59 -1.0
2,370,330 + Ga0059261_2266 0.59 -0.9
2,370,330 + Ga0059261_2266 0.59 +0.8
2,370,330 + Ga0059261_2266 0.59 -0.7
2,370,330 + Ga0059261_2266 0.59 -0.5
2,370,331 - Ga0059261_2266 0.59 -1.1
2,370,331 - Ga0059261_2266 0.59 -1.6
2,370,331 - Ga0059261_2266 0.59 -0.2
2,370,331 - Ga0059261_2266 0.59 -0.9
2,370,549 + -1.4
2,370,549 + -0.5
2,370,549 + -0.6
2,370,549 + +1.3
2,370,549 + -0.9
2,370,549 + -0.8
2,370,549 + -1.0
2,370,550 - +0.0
2,370,550 - -0.2
2,370,550 - -0.4
2,370,550 - -0.1
2,370,550 - +0.6
2,370,551 + -0.3
2,370,552 - +0.2
2,370,552 - +0.0
2,370,622 + -0.2
2,370,622 + -1.5
2,370,622 + +0.9
2,370,623 - -0.1
2,370,623 - -0.6
2,370,736 + Ga0059261_2267 0.12 -1.5
2,370,737 - Ga0059261_2267 0.12 -0.6
2,370,865 + Ga0059261_2267 0.27 +1.0
2,370,865 + Ga0059261_2267 0.27 -0.4
2,370,865 + Ga0059261_2267 0.27 -0.6
2,370,865 + Ga0059261_2267 0.27 -0.4
2,370,865 + Ga0059261_2267 0.27 -0.2
2,370,865 + Ga0059261_2267 0.27 -0.4
2,370,865 + Ga0059261_2267 0.27 -0.6
2,370,865 + Ga0059261_2267 0.27 +0.2
2,370,866 - Ga0059261_2267 0.27 +0.6
2,370,866 - Ga0059261_2267 0.27 -0.2
2,370,866 - Ga0059261_2267 0.27 -1.1
2,370,866 - Ga0059261_2267 0.27 -0.9
2,370,973 + Ga0059261_2267 0.39 +0.2
2,370,973 + Ga0059261_2267 0.39 -0.0
2,370,974 - Ga0059261_2267 0.39 +0.9
2,370,974 - Ga0059261_2267 0.39 -1.4
2,370,974 - Ga0059261_2267 0.39 -0.4
2,370,974 - Ga0059261_2267 0.39 +0.4
2,370,976 + Ga0059261_2267 0.39 -0.4
2,370,976 + Ga0059261_2267 0.39 +0.2
2,370,976 + Ga0059261_2267 0.39 -0.0
2,370,976 + Ga0059261_2267 0.39 -1.1
2,370,976 + Ga0059261_2267 0.39 -0.3
2,370,976 + Ga0059261_2267 0.39 +0.1
2,370,976 + Ga0059261_2267 0.39 -0.7
2,370,977 - Ga0059261_2267 0.39 -1.9
2,370,977 - Ga0059261_2267 0.39 +0.7
2,370,977 - Ga0059261_2267 0.39 -0.2
2,370,977 - Ga0059261_2267 0.39 -0.7
2,370,977 - Ga0059261_2267 0.39 -0.9
2,371,015 + Ga0059261_2267 0.44 -0.8
2,371,027 - Ga0059261_2267 0.45 -0.0
2,371,168 + Ga0059261_2267 0.61 -0.9
2,371,168 + Ga0059261_2267 0.61 -0.3
2,371,168 + Ga0059261_2267 0.61 -0.9
2,371,168 + Ga0059261_2267 0.61 +1.0
2,371,168 + Ga0059261_2267 0.61 +0.5
2,371,168 + Ga0059261_2267 0.61 -0.8
2,371,168 + Ga0059261_2267 0.61 -0.2
2,371,168 + Ga0059261_2267 0.61 -1.6
2,371,169 - Ga0059261_2267 0.61 +1.1
2,371,169 - Ga0059261_2267 0.61 +0.0
2,371,169 - Ga0059261_2267 0.61 -0.7
2,371,169 - Ga0059261_2267 0.61 +0.4
2,371,169 - Ga0059261_2267 0.61 +0.4
2,371,169 - Ga0059261_2267 0.61 +1.8
2,371,169 - Ga0059261_2267 0.61 +0.5
2,371,169 - Ga0059261_2267 0.61 +0.8
2,371,169 - Ga0059261_2267 0.61 +0.0
2,371,201 + Ga0059261_2267 0.65 -0.0
2,371,201 + Ga0059261_2267 0.65 -0.4
2,371,201 + Ga0059261_2267 0.65 -0.4
2,371,202 - Ga0059261_2267 0.65 +0.2
2,371,202 - Ga0059261_2267 0.65 -3.4
2,371,202 - Ga0059261_2267 0.65 +0.4
2,371,346 - Ga0059261_2267 0.82 +1.2
2,371,346 - Ga0059261_2267 0.82 -0.2
2,371,481 - -0.5

Or see this region's nucleotide sequence