Experiment: Polymyxin B sulfate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1449 and Ga0059261_1450 are separated by 215 nucleotides Ga0059261_1450 and Ga0059261_1451 are separated by 146 nucleotides Ga0059261_1451 and Ga0059261_1452 are separated by 30 nucleotides
Ga0059261_1449: Ga0059261_1449 - Glycine zipper 2TM domain, at 1,527,445 to 1,527,828
_1449
Ga0059261_1450: Ga0059261_1450 - Opacity protein and related surface antigens, at 1,528,044 to 1,528,580
_1450
Ga0059261_1451: Ga0059261_1451 - 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100), at 1,528,727 to 1,529,449
_1451
Ga0059261_1452: Ga0059261_1452 - ferrochelatase (EC 4.99.1.1), at 1,529,480 to 1,530,481
_1452
Position (kb)
1528
1529
1530 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1527.738 kb on + strand, within Ga0059261_1449 at 1527.739 kb on - strand, within Ga0059261_1449 at 1527.814 kb on + strand at 1527.815 kb on - strand at 1527.880 kb on + strand at 1527.880 kb on + strand at 1527.880 kb on + strand at 1527.880 kb on + strand at 1527.881 kb on - strand at 1527.881 kb on - strand at 1527.909 kb on + strand at 1527.949 kb on + strand at 1527.949 kb on + strand at 1527.950 kb on - strand at 1527.950 kb on - strand at 1528.024 kb on - strand at 1528.024 kb on - strand at 1528.040 kb on + strand at 1528.041 kb on - strand at 1528.041 kb on - strand at 1528.041 kb on - strand at 1528.051 kb on - strand at 1528.156 kb on - strand, within Ga0059261_1450 at 1528.209 kb on + strand, within Ga0059261_1450 at 1528.209 kb on + strand, within Ga0059261_1450 at 1528.209 kb on + strand, within Ga0059261_1450 at 1528.209 kb on + strand, within Ga0059261_1450 at 1528.209 kb on + strand, within Ga0059261_1450 at 1528.209 kb on + strand, within Ga0059261_1450 at 1528.210 kb on - strand, within Ga0059261_1450 at 1528.210 kb on - strand, within Ga0059261_1450 at 1528.210 kb on - strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.359 kb on + strand, within Ga0059261_1450 at 1528.360 kb on - strand, within Ga0059261_1450 at 1528.360 kb on - strand, within Ga0059261_1450 at 1528.360 kb on - strand, within Ga0059261_1450 at 1528.383 kb on + strand, within Ga0059261_1450 at 1528.384 kb on - strand, within Ga0059261_1450 at 1528.384 kb on - strand, within Ga0059261_1450 at 1528.384 kb on - strand, within Ga0059261_1450 at 1528.399 kb on - strand, within Ga0059261_1450 at 1528.399 kb on - strand, within Ga0059261_1450 at 1528.509 kb on + strand, within Ga0059261_1450 at 1528.510 kb on - strand, within Ga0059261_1450 at 1528.515 kb on + strand, within Ga0059261_1450 at 1528.516 kb on - strand, within Ga0059261_1450 at 1528.516 kb on - strand, within Ga0059261_1450 at 1528.524 kb on + strand, within Ga0059261_1450 at 1528.525 kb on - strand, within Ga0059261_1450 at 1528.525 kb on - strand, within Ga0059261_1450 at 1528.525 kb on - strand, within Ga0059261_1450 at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.578 kb on + strand at 1528.579 kb on - strand at 1528.579 kb on - strand at 1528.579 kb on - strand at 1528.579 kb on - strand at 1528.579 kb on - strand at 1528.731 kb on + strand at 1528.731 kb on + strand at 1528.731 kb on + strand at 1528.731 kb on + strand at 1528.731 kb on + strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.732 kb on - strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.735 kb on + strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.736 kb on - strand at 1528.912 kb on + strand, within Ga0059261_1451 at 1528.913 kb on - strand, within Ga0059261_1451 at 1528.914 kb on + strand, within Ga0059261_1451 at 1528.914 kb on + strand, within Ga0059261_1451 at 1529.010 kb on + strand, within Ga0059261_1451 at 1529.010 kb on + strand, within Ga0059261_1451 at 1529.010 kb on + strand, within Ga0059261_1451 at 1529.010 kb on + strand, within Ga0059261_1451 at 1529.011 kb on - strand, within Ga0059261_1451 at 1529.011 kb on - strand, within Ga0059261_1451 at 1529.011 kb on - strand, within Ga0059261_1451 at 1529.011 kb on - strand, within Ga0059261_1451 at 1529.164 kb on - strand, within Ga0059261_1451 at 1529.274 kb on + strand, within Ga0059261_1451 at 1529.352 kb on + strand, within Ga0059261_1451 at 1529.352 kb on + strand, within Ga0059261_1451 at 1529.353 kb on - strand, within Ga0059261_1451 at 1529.353 kb on - strand, within Ga0059261_1451 at 1529.353 kb on - strand, within Ga0059261_1451 at 1529.460 kb on + strand at 1529.460 kb on + strand at 1529.460 kb on + strand at 1529.482 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml remove 1,527,738 + Ga0059261_1449 0.76 -0.6 1,527,739 - Ga0059261_1449 0.77 -0.1 1,527,814 + -0.5 1,527,815 - -0.3 1,527,880 + -0.7 1,527,880 + -0.7 1,527,880 + +0.8 1,527,880 + -0.1 1,527,881 - +0.3 1,527,881 - +0.0 1,527,909 + +0.2 1,527,949 + +0.0 1,527,949 + -1.0 1,527,950 - +0.0 1,527,950 - -0.6 1,528,024 - +0.3 1,528,024 - -0.0 1,528,040 + +0.0 1,528,041 - -1.0 1,528,041 - -0.4 1,528,041 - +1.0 1,528,051 - +1.0 1,528,156 - Ga0059261_1450 0.21 +0.2 1,528,209 + Ga0059261_1450 0.31 +0.7 1,528,209 + Ga0059261_1450 0.31 +0.2 1,528,209 + Ga0059261_1450 0.31 +1.6 1,528,209 + Ga0059261_1450 0.31 +0.3 1,528,209 + Ga0059261_1450 0.31 +0.8 1,528,209 + Ga0059261_1450 0.31 +0.9 1,528,210 - Ga0059261_1450 0.31 +0.1 1,528,210 - Ga0059261_1450 0.31 -0.0 1,528,210 - Ga0059261_1450 0.31 +0.1 1,528,359 + Ga0059261_1450 0.59 +0.6 1,528,359 + Ga0059261_1450 0.59 +0.0 1,528,359 + Ga0059261_1450 0.59 +1.0 1,528,359 + Ga0059261_1450 0.59 -0.1 1,528,359 + Ga0059261_1450 0.59 -0.5 1,528,359 + Ga0059261_1450 0.59 +0.5 1,528,359 + Ga0059261_1450 0.59 +0.2 1,528,359 + Ga0059261_1450 0.59 +2.2 1,528,360 - Ga0059261_1450 0.59 +0.2 1,528,360 - Ga0059261_1450 0.59 +0.8 1,528,360 - Ga0059261_1450 0.59 -0.1 1,528,383 + Ga0059261_1450 0.63 -0.4 1,528,384 - Ga0059261_1450 0.63 -0.7 1,528,384 - Ga0059261_1450 0.63 +0.1 1,528,384 - Ga0059261_1450 0.63 +0.2 1,528,399 - Ga0059261_1450 0.66 +0.8 1,528,399 - Ga0059261_1450 0.66 -1.0 1,528,509 + Ga0059261_1450 0.87 +0.8 1,528,510 - Ga0059261_1450 0.87 -0.2 1,528,515 + Ga0059261_1450 0.88 -0.1 1,528,516 - Ga0059261_1450 0.88 -0.4 1,528,516 - Ga0059261_1450 0.88 +0.5 1,528,524 + Ga0059261_1450 0.89 -0.1 1,528,525 - Ga0059261_1450 0.90 -1.1 1,528,525 - Ga0059261_1450 0.90 +0.3 1,528,525 - Ga0059261_1450 0.90 +0.1 1,528,578 + -1.4 1,528,578 + -1.1 1,528,578 + +0.5 1,528,578 + -0.5 1,528,578 + +0.2 1,528,578 + +0.2 1,528,578 + +0.1 1,528,578 + +0.0 1,528,578 + +0.2 1,528,578 + +0.2 1,528,579 - +0.0 1,528,579 - -0.8 1,528,579 - +0.0 1,528,579 - -0.8 1,528,579 - -0.6 1,528,731 + -0.6 1,528,731 + +0.0 1,528,731 + -0.9 1,528,731 + +0.1 1,528,731 + -0.6 1,528,732 - -0.7 1,528,732 - +1.0 1,528,732 - +0.0 1,528,732 - -0.2 1,528,732 - +0.7 1,528,732 - +0.4 1,528,732 - +0.1 1,528,732 - -2.6 1,528,732 - -0.6 1,528,735 + -0.7 1,528,735 + -0.3 1,528,735 + +0.0 1,528,735 + +0.1 1,528,735 + +0.2 1,528,735 + +0.0 1,528,735 + -1.4 1,528,735 + +0.6 1,528,735 + -1.8 1,528,735 + -1.3 1,528,735 + +1.0 1,528,736 - -0.3 1,528,736 - -0.6 1,528,736 - -1.6 1,528,736 - -0.2 1,528,736 - +0.7 1,528,736 - -0.8 1,528,736 - +0.0 1,528,736 - +0.2 1,528,736 - -0.9 1,528,736 - -0.7 1,528,736 - +0.2 1,528,912 + Ga0059261_1451 0.26 -0.9 1,528,913 - Ga0059261_1451 0.26 -0.4 1,528,914 + Ga0059261_1451 0.26 -1.0 1,528,914 + Ga0059261_1451 0.26 -1.4 1,529,010 + Ga0059261_1451 0.39 -1.3 1,529,010 + Ga0059261_1451 0.39 -0.6 1,529,010 + Ga0059261_1451 0.39 -0.6 1,529,010 + Ga0059261_1451 0.39 -0.8 1,529,011 - Ga0059261_1451 0.39 -2.2 1,529,011 - Ga0059261_1451 0.39 +0.0 1,529,011 - Ga0059261_1451 0.39 +0.4 1,529,011 - Ga0059261_1451 0.39 -0.2 1,529,164 - Ga0059261_1451 0.60 +0.6 1,529,274 + Ga0059261_1451 0.76 +0.6 1,529,352 + Ga0059261_1451 0.86 -0.2 1,529,352 + Ga0059261_1451 0.86 -1.7 1,529,353 - Ga0059261_1451 0.87 +0.9 1,529,353 - Ga0059261_1451 0.87 +0.0 1,529,353 - Ga0059261_1451 0.87 +0.3 1,529,460 + -0.8 1,529,460 + -0.9 1,529,460 + +0.3 1,529,482 - -0.0
Or see this region's nucleotide sequence