Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1444

Experiment: Polymyxin B sulfate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1443 and Ga0059261_1444 are separated by 130 nucleotidesGa0059261_1444 and Ga0059261_1445 are separated by 104 nucleotidesGa0059261_1445 and Ga0059261_1446 are separated by 109 nucleotides Ga0059261_1443: Ga0059261_1443 - Hemolysins and related proteins containing CBS domains, at 1,522,413 to 1,523,720 _1443 Ga0059261_1444: Ga0059261_1444 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,523,851 to 1,524,519 _1444 Ga0059261_1445: Ga0059261_1445 - Cytosine/adenosine deaminases, at 1,524,624 to 1,525,073 _1445 Ga0059261_1446: Ga0059261_1446 - hypothetical protein, at 1,525,183 to 1,525,467 _1446 Position (kb) 1523 1524 1525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.365 kb on + strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.366 kb on - strand, within Ga0059261_1443at 1523.476 kb on + strandat 1523.476 kb on + strand, within Ga0059261_1443at 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.736 kb on + strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.737 kb on - strandat 1523.742 kb on + strandat 1523.742 kb on + strandat 1523.743 kb on - strandat 1523.743 kb on - strandat 1523.743 kb on - strandat 1523.828 kb on + strandat 1523.829 kb on - strandat 1523.856 kb on + strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.857 kb on - strandat 1523.868 kb on + strandat 1523.869 kb on - strandat 1523.869 kb on - strandat 1523.869 kb on - strandat 1523.869 kb on - strandat 1523.983 kb on + strand, within Ga0059261_1444at 1523.983 kb on + strand, within Ga0059261_1444at 1523.983 kb on + strand, within Ga0059261_1444at 1523.983 kb on + strand, within Ga0059261_1444at 1523.984 kb on - strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.079 kb on + strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.080 kb on - strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.081 kb on + strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.082 kb on - strand, within Ga0059261_1444at 1524.263 kb on - strand, within Ga0059261_1444at 1524.263 kb on - strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.274 kb on + strand, within Ga0059261_1444at 1524.275 kb on - strandat 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.275 kb on - strand, within Ga0059261_1444at 1524.286 kb on + strand, within Ga0059261_1444at 1524.286 kb on + strand, within Ga0059261_1444at 1524.287 kb on - strand, within Ga0059261_1444at 1524.287 kb on - strand, within Ga0059261_1444at 1524.287 kb on - strand, within Ga0059261_1444at 1524.319 kb on + strand, within Ga0059261_1444at 1524.319 kb on + strand, within Ga0059261_1444at 1524.319 kb on + strand, within Ga0059261_1444at 1524.320 kb on - strand, within Ga0059261_1444at 1524.320 kb on - strand, within Ga0059261_1444at 1524.320 kb on - strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.364 kb on + strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.365 kb on - strand, within Ga0059261_1444at 1524.413 kb on - strand, within Ga0059261_1444at 1524.517 kb on + strandat 1524.517 kb on + strandat 1524.518 kb on - strandat 1525.083 kb on - strandat 1525.107 kb on + strandat 1525.107 kb on + strandat 1525.107 kb on + strandat 1525.107 kb on + strandat 1525.107 kb on + strandat 1525.108 kb on - strandat 1525.108 kb on - strandat 1525.174 kb on + strandat 1525.174 kb on + strandat 1525.174 kb on + strandat 1525.175 kb on - strandat 1525.175 kb on - strandat 1525.175 kb on - strandat 1525.175 kb on - strandat 1525.175 kb on - strandat 1525.184 kb on + strandat 1525.185 kb on - strandat 1525.185 kb on - strandat 1525.185 kb on - strandat 1525.185 kb on - strandat 1525.296 kb on + strand, within Ga0059261_1446at 1525.296 kb on + strand, within Ga0059261_1446at 1525.296 kb on + strand, within Ga0059261_1446at 1525.296 kb on + strand, within Ga0059261_1446at 1525.296 kb on + strand, within Ga0059261_1446at 1525.297 kb on - strand, within Ga0059261_1446at 1525.297 kb on - strand, within Ga0059261_1446at 1525.297 kb on - strand, within Ga0059261_1446at 1525.297 kb on - strand, within Ga0059261_1446at 1525.297 kb on - strandat 1525.297 kb on - strand, within Ga0059261_1446at 1525.298 kb on + strandat 1525.298 kb on + strand, within Ga0059261_1446at 1525.298 kb on + strand, within Ga0059261_1446at 1525.298 kb on + strand, within Ga0059261_1446at 1525.298 kb on + strand, within Ga0059261_1446at 1525.298 kb on + strand, within Ga0059261_1446at 1525.299 kb on - strand, within Ga0059261_1446at 1525.299 kb on - strand, within Ga0059261_1446at 1525.299 kb on - strand, within Ga0059261_1446at 1525.447 kb on + strandat 1525.447 kb on + strandat 1525.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml
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1,523,365 + Ga0059261_1443 0.73 +0.5
1,523,365 + Ga0059261_1443 0.73 -0.2
1,523,365 + Ga0059261_1443 0.73 +0.3
1,523,365 + Ga0059261_1443 0.73 -1.2
1,523,365 + Ga0059261_1443 0.73 -0.3
1,523,365 + Ga0059261_1443 0.73 +0.1
1,523,365 + Ga0059261_1443 0.73 -2.4
1,523,365 + Ga0059261_1443 0.73 +0.8
1,523,365 + Ga0059261_1443 0.73 -0.1
1,523,365 + Ga0059261_1443 0.73 -0.3
1,523,365 + Ga0059261_1443 0.73 -0.0
1,523,365 + Ga0059261_1443 0.73 +0.3
1,523,365 + Ga0059261_1443 0.73 +0.2
1,523,365 + Ga0059261_1443 0.73 -0.5
1,523,365 + Ga0059261_1443 0.73 +0.5
1,523,365 + Ga0059261_1443 0.73 -0.4
1,523,366 - Ga0059261_1443 0.73 +0.0
1,523,366 - Ga0059261_1443 0.73 -0.4
1,523,366 - Ga0059261_1443 0.73 +0.3
1,523,366 - Ga0059261_1443 0.73 +0.2
1,523,366 - Ga0059261_1443 0.73 +0.6
1,523,366 - Ga0059261_1443 0.73 -0.1
1,523,366 - Ga0059261_1443 0.73 -0.7
1,523,366 - Ga0059261_1443 0.73 +1.0
1,523,366 - Ga0059261_1443 0.73 -0.8
1,523,366 - Ga0059261_1443 0.73 -0.5
1,523,366 - Ga0059261_1443 0.73 -0.6
1,523,366 - Ga0059261_1443 0.73 -0.1
1,523,366 - Ga0059261_1443 0.73 +0.9
1,523,366 - Ga0059261_1443 0.73 -0.5
1,523,476 + +0.0
1,523,476 + Ga0059261_1443 0.81 +0.2
1,523,736 + +0.3
1,523,736 + -0.6
1,523,736 + +0.1
1,523,736 + +0.3
1,523,736 + +0.6
1,523,736 + -0.6
1,523,737 - -0.3
1,523,737 - -0.4
1,523,737 - -0.3
1,523,737 - -0.3
1,523,737 - -0.8
1,523,742 + -0.6
1,523,742 + +1.2
1,523,743 - +0.6
1,523,743 - -0.6
1,523,743 - -0.6
1,523,828 + -2.2
1,523,829 - -1.2
1,523,856 + -1.0
1,523,857 - -1.7
1,523,857 - -1.4
1,523,857 - -2.6
1,523,857 - -1.6
1,523,857 - -0.6
1,523,857 - -2.4
1,523,868 + -1.8
1,523,869 - -1.2
1,523,869 - -1.7
1,523,869 - -1.2
1,523,869 - -1.0
1,523,983 + Ga0059261_1444 0.20 -1.5
1,523,983 + Ga0059261_1444 0.20 -1.6
1,523,983 + Ga0059261_1444 0.20 -1.3
1,523,983 + Ga0059261_1444 0.20 -1.2
1,523,984 - Ga0059261_1444 0.20 -1.2
1,524,079 + Ga0059261_1444 0.34 -2.0
1,524,079 + Ga0059261_1444 0.34 -3.6
1,524,079 + Ga0059261_1444 0.34 -1.2
1,524,079 + Ga0059261_1444 0.34 -1.8
1,524,079 + Ga0059261_1444 0.34 -0.9
1,524,079 + Ga0059261_1444 0.34 -1.9
1,524,079 + Ga0059261_1444 0.34 -0.8
1,524,079 + Ga0059261_1444 0.34 -1.5
1,524,079 + Ga0059261_1444 0.34 -0.4
1,524,079 + Ga0059261_1444 0.34 -0.9
1,524,079 + Ga0059261_1444 0.34 -1.6
1,524,079 + Ga0059261_1444 0.34 -0.7
1,524,079 + Ga0059261_1444 0.34 -0.3
1,524,080 - Ga0059261_1444 0.34 -0.6
1,524,080 - Ga0059261_1444 0.34 -1.6
1,524,080 - Ga0059261_1444 0.34 -1.9
1,524,080 - Ga0059261_1444 0.34 -1.2
1,524,080 - Ga0059261_1444 0.34 -2.3
1,524,080 - Ga0059261_1444 0.34 -2.3
1,524,081 + Ga0059261_1444 0.34 -0.8
1,524,081 + Ga0059261_1444 0.34 -2.2
1,524,081 + Ga0059261_1444 0.34 -0.7
1,524,081 + Ga0059261_1444 0.34 -2.3
1,524,081 + Ga0059261_1444 0.34 -1.0
1,524,082 - Ga0059261_1444 0.35 -1.7
1,524,082 - Ga0059261_1444 0.35 -1.8
1,524,082 - Ga0059261_1444 0.35 -2.6
1,524,082 - Ga0059261_1444 0.35 -1.2
1,524,082 - Ga0059261_1444 0.35 -1.0
1,524,082 - Ga0059261_1444 0.35 -1.0
1,524,082 - Ga0059261_1444 0.35 -1.2
1,524,263 - Ga0059261_1444 0.62 -0.6
1,524,263 - Ga0059261_1444 0.62 -0.8
1,524,274 + Ga0059261_1444 0.63 -3.4
1,524,274 + Ga0059261_1444 0.63 -1.8
1,524,274 + Ga0059261_1444 0.63 -1.4
1,524,274 + Ga0059261_1444 0.63 -0.6
1,524,274 + Ga0059261_1444 0.63 -2.6
1,524,275 - +1.0
1,524,275 - Ga0059261_1444 0.63 +0.0
1,524,275 - Ga0059261_1444 0.63 -1.7
1,524,275 - Ga0059261_1444 0.63 -0.8
1,524,275 - Ga0059261_1444 0.63 -2.1
1,524,275 - Ga0059261_1444 0.63 -2.4
1,524,275 - Ga0059261_1444 0.63 -2.3
1,524,275 - Ga0059261_1444 0.63 -1.0
1,524,275 - Ga0059261_1444 0.63 -1.3
1,524,275 - Ga0059261_1444 0.63 -1.8
1,524,275 - Ga0059261_1444 0.63 -0.8
1,524,275 - Ga0059261_1444 0.63 -2.1
1,524,275 - Ga0059261_1444 0.63 -1.0
1,524,275 - Ga0059261_1444 0.63 -1.8
1,524,275 - Ga0059261_1444 0.63 -2.0
1,524,275 - Ga0059261_1444 0.63 +0.0
1,524,286 + Ga0059261_1444 0.65 -1.4
1,524,286 + Ga0059261_1444 0.65 -1.2
1,524,287 - Ga0059261_1444 0.65 -3.1
1,524,287 - Ga0059261_1444 0.65 -0.3
1,524,287 - Ga0059261_1444 0.65 -0.6
1,524,319 + Ga0059261_1444 0.70 -2.2
1,524,319 + Ga0059261_1444 0.70 -0.3
1,524,319 + Ga0059261_1444 0.70 -1.3
1,524,320 - Ga0059261_1444 0.70 -2.8
1,524,320 - Ga0059261_1444 0.70 -0.9
1,524,320 - Ga0059261_1444 0.70 -1.5
1,524,364 + Ga0059261_1444 0.77 -0.5
1,524,364 + Ga0059261_1444 0.77 -1.4
1,524,364 + Ga0059261_1444 0.77 -1.6
1,524,364 + Ga0059261_1444 0.77 -1.1
1,524,364 + Ga0059261_1444 0.77 -1.4
1,524,364 + Ga0059261_1444 0.77 -0.8
1,524,364 + Ga0059261_1444 0.77 -1.0
1,524,364 + Ga0059261_1444 0.77 -1.1
1,524,364 + Ga0059261_1444 0.77 -0.8
1,524,364 + Ga0059261_1444 0.77 -1.2
1,524,364 + Ga0059261_1444 0.77 +0.2
1,524,364 + Ga0059261_1444 0.77 -2.1
1,524,365 - Ga0059261_1444 0.77 -1.6
1,524,365 - Ga0059261_1444 0.77 -0.6
1,524,365 - Ga0059261_1444 0.77 +1.0
1,524,365 - Ga0059261_1444 0.77 -2.1
1,524,365 - Ga0059261_1444 0.77 -0.1
1,524,365 - Ga0059261_1444 0.77 -4.4
1,524,365 - Ga0059261_1444 0.77 -1.3
1,524,365 - Ga0059261_1444 0.77 -1.8
1,524,413 - Ga0059261_1444 0.84 -3.6
1,524,517 + -0.2
1,524,517 + -0.7
1,524,518 - +1.0
1,525,083 - -0.2
1,525,107 + +0.0
1,525,107 + +0.5
1,525,107 + +0.1
1,525,107 + -0.4
1,525,107 + -0.5
1,525,108 - +1.3
1,525,108 - +0.0
1,525,174 + +0.4
1,525,174 + +0.0
1,525,174 + +0.1
1,525,175 - -0.3
1,525,175 - -1.0
1,525,175 - -0.1
1,525,175 - -0.4
1,525,175 - +1.0
1,525,184 + +0.6
1,525,185 - -0.2
1,525,185 - +0.2
1,525,185 - +0.3
1,525,185 - +0.2
1,525,296 + Ga0059261_1446 0.40 +0.4
1,525,296 + Ga0059261_1446 0.40 +0.8
1,525,296 + Ga0059261_1446 0.40 +0.3
1,525,296 + Ga0059261_1446 0.40 -1.0
1,525,296 + Ga0059261_1446 0.40 -0.2
1,525,297 - Ga0059261_1446 0.40 +0.9
1,525,297 - Ga0059261_1446 0.40 -0.1
1,525,297 - Ga0059261_1446 0.40 -0.9
1,525,297 - Ga0059261_1446 0.40 -0.9
1,525,297 - +1.0
1,525,297 - Ga0059261_1446 0.40 -0.4
1,525,298 + +1.8
1,525,298 + Ga0059261_1446 0.40 -0.2
1,525,298 + Ga0059261_1446 0.40 +0.4
1,525,298 + Ga0059261_1446 0.40 +0.2
1,525,298 + Ga0059261_1446 0.40 +0.4
1,525,298 + Ga0059261_1446 0.40 -0.3
1,525,299 - Ga0059261_1446 0.41 +1.0
1,525,299 - Ga0059261_1446 0.41 -0.1
1,525,299 - Ga0059261_1446 0.41 +0.8
1,525,447 + +1.2
1,525,447 + -1.0
1,525,448 - +0.2

Or see this region's nucleotide sequence