Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1285

Experiment: Polymyxin B sulfate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1284 and Ga0059261_1285 are separated by 70 nucleotidesGa0059261_1285 and Ga0059261_1286 are separated by 155 nucleotidesGa0059261_1286 and Ga0059261_1287 are separated by 91 nucleotides Ga0059261_1284: Ga0059261_1284 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,345,271 to 1,346,554 _1284 Ga0059261_1285: Ga0059261_1285 - Uncharacterized conserved protein, at 1,346,625 to 1,346,954 _1285 Ga0059261_1286: Ga0059261_1286 - phasin family protein, at 1,347,110 to 1,347,814 _1286 Ga0059261_1287: Ga0059261_1287 - poly(R)-hydroxyalkanoic acid synthase, class I, at 1,347,906 to 1,349,783 _1287 Position (kb) 1346 1347Strain fitness (log2 ratio) -2 -1 0 1at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.713 kb on + strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.714 kb on - strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.834 kb on + strand, within Ga0059261_1285at 1346.835 kb on - strand, within Ga0059261_1285at 1346.836 kb on + strand, within Ga0059261_1285at 1346.836 kb on + strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.837 kb on - strand, within Ga0059261_1285at 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1347.001 kb on + strandat 1347.249 kb on + strandat 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.343 kb on - strand, within Ga0059261_1286at 1347.343 kb on - strand, within Ga0059261_1286at 1347.647 kb on + strand, within Ga0059261_1286at 1347.648 kb on - strand, within Ga0059261_1286at 1347.648 kb on - strand, within Ga0059261_1286at 1347.794 kb on - strandat 1347.849 kb on + strandat 1347.852 kb on - strandat 1347.922 kb on + strandat 1347.922 kb on + strandat 1347.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml
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1,346,713 + Ga0059261_1285 0.27 +0.2
1,346,713 + Ga0059261_1285 0.27 -0.9
1,346,713 + Ga0059261_1285 0.27 -1.3
1,346,713 + Ga0059261_1285 0.27 +0.0
1,346,713 + Ga0059261_1285 0.27 -0.8
1,346,713 + Ga0059261_1285 0.27 -0.5
1,346,713 + Ga0059261_1285 0.27 -1.8
1,346,714 - Ga0059261_1285 0.27 -0.2
1,346,714 - Ga0059261_1285 0.27 -0.2
1,346,714 - Ga0059261_1285 0.27 -1.3
1,346,714 - Ga0059261_1285 0.27 +1.0
1,346,714 - Ga0059261_1285 0.27 -1.5
1,346,834 + Ga0059261_1285 0.63 -0.8
1,346,834 + Ga0059261_1285 0.63 -0.8
1,346,834 + Ga0059261_1285 0.63 -0.6
1,346,834 + Ga0059261_1285 0.63 -1.7
1,346,834 + Ga0059261_1285 0.63 -2.4
1,346,835 - Ga0059261_1285 0.64 -0.8
1,346,836 + Ga0059261_1285 0.64 -1.2
1,346,836 + Ga0059261_1285 0.64 -0.0
1,346,837 - Ga0059261_1285 0.64 -0.4
1,346,837 - Ga0059261_1285 0.64 -1.4
1,346,837 - Ga0059261_1285 0.64 -0.5
1,346,837 - Ga0059261_1285 0.64 +0.5
1,346,837 - Ga0059261_1285 0.64 -0.4
1,346,837 - Ga0059261_1285 0.64 -1.5
1,346,997 - -0.4
1,346,997 - -0.0
1,346,997 - +0.6
1,346,997 - -0.0
1,346,997 - +0.4
1,347,001 + -1.0
1,347,249 + +1.0
1,347,250 - Ga0059261_1286 0.20 +1.1
1,347,250 - Ga0059261_1286 0.20 -0.9
1,347,250 - Ga0059261_1286 0.20 -0.6
1,347,250 - Ga0059261_1286 0.20 -1.0
1,347,250 - Ga0059261_1286 0.20 -0.6
1,347,250 - Ga0059261_1286 0.20 -0.3
1,347,250 - Ga0059261_1286 0.20 +0.1
1,347,250 - Ga0059261_1286 0.20 -0.5
1,347,343 - Ga0059261_1286 0.33 +0.6
1,347,343 - Ga0059261_1286 0.33 -0.7
1,347,647 + Ga0059261_1286 0.76 -0.5
1,347,648 - Ga0059261_1286 0.76 +0.6
1,347,648 - Ga0059261_1286 0.76 +0.1
1,347,794 - +0.7
1,347,849 + +1.0
1,347,852 - +0.3
1,347,922 + -1.2
1,347,922 + -1.6
1,347,923 - +1.4

Or see this region's nucleotide sequence