Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0493

Experiment: Polymyxin B sulfate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0492 and Ga0059261_0493 are separated by 83 nucleotidesGa0059261_0493 and Ga0059261_0494 are separated by 20 nucleotidesGa0059261_0494 and Ga0059261_0495 overlap by 1 nucleotides Ga0059261_0492: Ga0059261_0492 - Predicted phosphatase, at 485,500 to 486,855 _0492 Ga0059261_0493: Ga0059261_0493 - hypothetical protein, at 486,939 to 487,226 _0493 Ga0059261_0494: Ga0059261_0494 - ABC-type antimicrobial peptide transport system, ATPase component, at 487,247 to 487,903 _0494 Ga0059261_0495: Ga0059261_0495 - ABC-type transport system, involved in lipoprotein release, permease component, at 487,903 to 489,186 _0495 Position (kb) 486 487 488Strain fitness (log2 ratio) -2 -1 0 1at 485.954 kb on + strand, within Ga0059261_0492at 486.018 kb on - strand, within Ga0059261_0492at 486.186 kb on - strand, within Ga0059261_0492at 486.186 kb on - strand, within Ga0059261_0492at 486.420 kb on - strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.452 kb on + strand, within Ga0059261_0492at 486.453 kb on - strand, within Ga0059261_0492at 486.453 kb on - strand, within Ga0059261_0492at 486.453 kb on - strand, within Ga0059261_0492at 486.506 kb on + strand, within Ga0059261_0492at 486.506 kb on + strand, within Ga0059261_0492at 486.507 kb on - strand, within Ga0059261_0492at 486.613 kb on + strand, within Ga0059261_0492at 486.614 kb on - strand, within Ga0059261_0492at 486.624 kb on + strand, within Ga0059261_0492at 486.692 kb on + strand, within Ga0059261_0492at 486.692 kb on + strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.693 kb on - strand, within Ga0059261_0492at 486.919 kb on - strandat 487.162 kb on + strand, within Ga0059261_0493at 487.162 kb on + strand, within Ga0059261_0493at 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.209 kb on + strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.210 kb on - strandat 487.224 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.244 kb on + strandat 487.245 kb on - strandat 487.245 kb on - strandat 487.245 kb on - strandat 487.245 kb on - strandat 487.257 kb on + strandat 487.257 kb on + strandat 487.258 kb on - strandat 487.258 kb on - strandat 487.258 kb on - strandat 487.271 kb on - strandat 487.271 kb on - strandat 487.542 kb on + strand, within Ga0059261_0494at 487.543 kb on - strand, within Ga0059261_0494at 487.663 kb on + strand, within Ga0059261_0494at 487.924 kb on + strandat 487.924 kb on + strandat 487.924 kb on + strandat 487.924 kb on + strandat 487.925 kb on - strandat 487.925 kb on - strandat 487.925 kb on - strandat 487.925 kb on - strandat 487.925 kb on - strandat 487.925 kb on - strandat 487.926 kb on + strandat 487.926 kb on + strandat 487.927 kb on - strandat 487.927 kb on - strandat 487.927 kb on - strandat 488.110 kb on + strand, within Ga0059261_0495at 488.110 kb on + strandat 488.110 kb on + strand, within Ga0059261_0495at 488.110 kb on + strand, within Ga0059261_0495at 488.111 kb on - strand, within Ga0059261_0495at 488.111 kb on - strand, within Ga0059261_0495at 488.111 kb on - strand, within Ga0059261_0495at 488.111 kb on - strand, within Ga0059261_0495at 488.111 kb on - strand, within Ga0059261_0495at 488.137 kb on - strand, within Ga0059261_0495

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml
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485,954 + Ga0059261_0492 0.33 +0.4
486,018 - Ga0059261_0492 0.38 -0.6
486,186 - Ga0059261_0492 0.51 +0.4
486,186 - Ga0059261_0492 0.51 +0.1
486,420 - Ga0059261_0492 0.68 -0.6
486,452 + Ga0059261_0492 0.70 -0.4
486,452 + Ga0059261_0492 0.70 +0.3
486,452 + Ga0059261_0492 0.70 -1.0
486,452 + Ga0059261_0492 0.70 -1.5
486,452 + Ga0059261_0492 0.70 -1.9
486,453 - Ga0059261_0492 0.70 -0.6
486,453 - Ga0059261_0492 0.70 +0.6
486,453 - Ga0059261_0492 0.70 -0.6
486,506 + Ga0059261_0492 0.74 +0.3
486,506 + Ga0059261_0492 0.74 -0.0
486,507 - Ga0059261_0492 0.74 -0.3
486,613 + Ga0059261_0492 0.82 +0.8
486,614 - Ga0059261_0492 0.82 +0.1
486,624 + Ga0059261_0492 0.83 -0.3
486,692 + Ga0059261_0492 0.88 -0.1
486,692 + Ga0059261_0492 0.88 -0.3
486,693 - Ga0059261_0492 0.88 +0.1
486,693 - Ga0059261_0492 0.88 -0.1
486,693 - Ga0059261_0492 0.88 +0.1
486,693 - Ga0059261_0492 0.88 -0.4
486,919 - +0.1
487,162 + Ga0059261_0493 0.77 -0.7
487,162 + Ga0059261_0493 0.77 -0.6
487,209 + -0.1
487,209 + -0.2
487,209 + -0.5
487,209 + +0.2
487,209 + +0.1
487,209 + -0.9
487,210 - -0.1
487,210 - -0.6
487,210 - -0.1
487,210 - -0.1
487,210 - +0.4
487,210 - -1.0
487,210 - -0.6
487,210 - -0.4
487,224 + +0.3
487,244 + +1.6
487,244 + -0.7
487,244 + +0.2
487,244 + -0.9
487,244 + +0.3
487,244 + -1.0
487,245 - +0.2
487,245 - +1.3
487,245 - -0.1
487,245 - -0.1
487,257 + +0.1
487,257 + +0.2
487,258 - +0.3
487,258 - -0.8
487,258 - -0.3
487,271 - +0.0
487,271 - +0.1
487,542 + Ga0059261_0494 0.45 -0.2
487,543 - Ga0059261_0494 0.45 -1.7
487,663 + Ga0059261_0494 0.63 -0.8
487,924 + +1.0
487,924 + -1.9
487,924 + -0.5
487,924 + -1.0
487,925 - +0.5
487,925 - +0.6
487,925 - +0.3
487,925 - +0.9
487,925 - -0.5
487,925 - +0.0
487,926 + -0.2
487,926 + -0.3
487,927 - -0.5
487,927 - -0.5
487,927 - -0.1
488,110 + Ga0059261_0495 0.16 +0.4
488,110 + +0.5
488,110 + Ga0059261_0495 0.16 -0.4
488,110 + Ga0059261_0495 0.16 -0.3
488,111 - Ga0059261_0495 0.16 +0.2
488,111 - Ga0059261_0495 0.16 +0.6
488,111 - Ga0059261_0495 0.16 -0.0
488,111 - Ga0059261_0495 0.16 -0.3
488,111 - Ga0059261_0495 0.16 +0.4
488,137 - Ga0059261_0495 0.18 -0.6

Or see this region's nucleotide sequence