Experiment: Polymyxin B sulfate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0180 and Ga0059261_0181 are separated by 78 nucleotides Ga0059261_0181 and Ga0059261_0182 overlap by 4 nucleotides
Ga0059261_0180: Ga0059261_0180 - outer membrane protein assembly complex, YaeT protein, at 162,935 to 165,706
_0180
Ga0059261_0181: Ga0059261_0181 - Predicted membrane-associated Zn-dependent proteases 1, at 165,785 to 166,918
_0181
Ga0059261_0182: Ga0059261_0182 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 166,915 to 168,072
_0182
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.898 kb on + strand at 165.945 kb on + strand at 165.946 kb on - strand, within Ga0059261_0181 at 165.946 kb on - strand, within Ga0059261_0181 at 165.946 kb on - strand, within Ga0059261_0181 at 165.946 kb on - strand, within Ga0059261_0181 at 166.032 kb on - strand, within Ga0059261_0181 at 166.032 kb on - strand, within Ga0059261_0181 at 166.124 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.158 kb on - strand, within Ga0059261_0181 at 166.261 kb on - strand, within Ga0059261_0181 at 166.348 kb on + strand, within Ga0059261_0181 at 166.348 kb on + strand, within Ga0059261_0181 at 166.377 kb on + strand, within Ga0059261_0181 at 166.377 kb on + strand, within Ga0059261_0181 at 166.704 kb on + strand, within Ga0059261_0181 at 166.705 kb on - strand, within Ga0059261_0181 at 166.705 kb on - strand, within Ga0059261_0181 at 166.705 kb on - strand, within Ga0059261_0181 at 166.830 kb on + strand at 166.830 kb on + strand at 166.831 kb on - strand at 166.831 kb on - strand at 166.831 kb on - strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.890 kb on + strand at 166.891 kb on - strand at 166.891 kb on - strand at 166.891 kb on - strand at 166.891 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml remove 165,898 + -1.5 165,945 + -0.7 165,946 - Ga0059261_0181 0.14 -0.9 165,946 - Ga0059261_0181 0.14 -1.7 165,946 - Ga0059261_0181 0.14 -0.4 165,946 - Ga0059261_0181 0.14 -0.7 166,032 - Ga0059261_0181 0.22 +0.1 166,032 - Ga0059261_0181 0.22 +0.3 166,124 - Ga0059261_0181 0.30 +0.1 166,158 - Ga0059261_0181 0.33 -0.5 166,158 - Ga0059261_0181 0.33 -0.2 166,158 - Ga0059261_0181 0.33 -1.4 166,158 - Ga0059261_0181 0.33 -1.3 166,158 - Ga0059261_0181 0.33 -0.7 166,158 - Ga0059261_0181 0.33 +0.0 166,261 - Ga0059261_0181 0.42 -0.2 166,348 + Ga0059261_0181 0.50 -1.8 166,348 + Ga0059261_0181 0.50 -0.6 166,377 + Ga0059261_0181 0.52 +0.8 166,377 + Ga0059261_0181 0.52 -1.1 166,704 + Ga0059261_0181 0.81 -1.4 166,705 - Ga0059261_0181 0.81 -3.2 166,705 - Ga0059261_0181 0.81 -0.5 166,705 - Ga0059261_0181 0.81 -0.7 166,830 + +1.3 166,830 + -0.8 166,831 - +0.4 166,831 - +0.2 166,831 - -0.3 166,890 + -0.6 166,890 + -0.5 166,890 + -1.4 166,890 + -1.7 166,890 + +0.3 166,890 + +2.4 166,890 + -0.6 166,890 + -0.5 166,890 + -0.8 166,890 + -1.7 166,891 - +1.8 166,891 - -0.9 166,891 - -0.6 166,891 - -1.3
Or see this region's nucleotide sequence