Experiment: Polymyxin B sulfate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0150 and Ga0059261_0151 are separated by 139 nucleotides Ga0059261_0151 and Ga0059261_0152 are separated by 2 nucleotides Ga0059261_0152 and Ga0059261_0153 overlap by 4 nucleotides Ga0059261_0153 and Ga0059261_0154 are separated by 173 nucleotides
Ga0059261_0150: Ga0059261_0150 - Uncharacterized conserved protein, at 142,318 to 143,094
_0150
Ga0059261_0151: Ga0059261_0151 - Acylphosphatases, at 143,234 to 143,509
_0151
Ga0059261_0152: Ga0059261_0152 - Protein of unknown function (DUF2794), at 143,512 to 143,853
_0152
Ga0059261_0153: Ga0059261_0153 - Serine acetyltransferase, at 143,850 to 144,548
_0153
Ga0059261_0154: Ga0059261_0154 - Predicted permeases, at 144,722 to 145,486
_0154
Position (kb)
143
144
145 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 142.957 kb on + strand, within Ga0059261_0150 at 142.957 kb on + strand, within Ga0059261_0150 at 142.957 kb on + strand, within Ga0059261_0150 at 142.957 kb on + strand, within Ga0059261_0150 at 142.957 kb on + strand, within Ga0059261_0150 at 143.042 kb on + strand at 143.042 kb on + strand at 143.042 kb on + strand at 143.043 kb on - strand at 143.072 kb on + strand at 143.072 kb on + strand at 143.072 kb on + strand at 143.101 kb on + strand at 143.106 kb on + strand at 143.106 kb on + strand at 143.106 kb on + strand at 143.106 kb on + strand at 143.107 kb on - strand at 143.107 kb on - strand at 143.107 kb on - strand at 143.181 kb on + strand at 143.181 kb on + strand at 143.182 kb on - strand at 143.182 kb on - strand at 143.182 kb on - strand at 143.182 kb on - strand at 143.225 kb on + strand at 143.226 kb on - strand at 143.226 kb on - strand at 143.226 kb on - strand at 143.226 kb on - strand at 143.226 kb on - strand at 143.229 kb on + strand at 143.229 kb on + strand at 143.229 kb on + strand at 143.229 kb on + strand at 143.229 kb on + strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.230 kb on - strand at 143.233 kb on + strand at 143.234 kb on - strand at 143.234 kb on - strand at 143.234 kb on - strand at 143.253 kb on + strand at 143.253 kb on + strand at 143.254 kb on - strand at 143.507 kb on + strand at 143.507 kb on + strand at 143.507 kb on + strand at 143.508 kb on - strand at 143.508 kb on - strand at 143.513 kb on + strand at 143.513 kb on + strand at 143.514 kb on - strand at 143.514 kb on - strand at 143.619 kb on + strand, within Ga0059261_0152 at 143.619 kb on + strand, within Ga0059261_0152 at 143.619 kb on + strand, within Ga0059261_0152 at 143.619 kb on + strand, within Ga0059261_0152 at 143.619 kb on + strand, within Ga0059261_0152 at 143.619 kb on + strand, within Ga0059261_0152 at 143.619 kb on + strand, within Ga0059261_0152 at 143.620 kb on - strand, within Ga0059261_0152 at 143.620 kb on - strand, within Ga0059261_0152 at 143.620 kb on - strand, within Ga0059261_0152 at 143.620 kb on - strand, within Ga0059261_0152 at 143.620 kb on - strand, within Ga0059261_0152 at 143.620 kb on - strand, within Ga0059261_0152 at 143.620 kb on - strand, within Ga0059261_0152 at 143.729 kb on + strand at 143.729 kb on + strand, within Ga0059261_0152 at 143.729 kb on + strand, within Ga0059261_0152 at 143.730 kb on - strand, within Ga0059261_0152 at 143.730 kb on - strand, within Ga0059261_0152 at 143.730 kb on - strand, within Ga0059261_0152 at 143.766 kb on - strand, within Ga0059261_0152 at 143.766 kb on - strand, within Ga0059261_0152 at 143.977 kb on + strand, within Ga0059261_0153 at 143.978 kb on - strand, within Ga0059261_0153 at 143.978 kb on - strand, within Ga0059261_0153 at 143.978 kb on - strand, within Ga0059261_0153 at 144.002 kb on - strand, within Ga0059261_0153 at 144.576 kb on - strand at 144.576 kb on - strand at 144.576 kb on - strand at 144.643 kb on + strand at 144.643 kb on + strand at 144.643 kb on + strand at 144.643 kb on + strand at 144.644 kb on - strand at 144.644 kb on - strand at 144.644 kb on - strand at 144.644 kb on - strand at 144.694 kb on + strand at 144.694 kb on + strand at 144.695 kb on - strand at 144.695 kb on - strand at 144.695 kb on - strand at 144.822 kb on + strand, within Ga0059261_0154 at 144.822 kb on + strand, within Ga0059261_0154 at 144.822 kb on + strand, within Ga0059261_0154 at 144.937 kb on + strand, within Ga0059261_0154 at 144.938 kb on - strand, within Ga0059261_0154 at 144.938 kb on - strand, within Ga0059261_0154 at 144.938 kb on - strand, within Ga0059261_0154 at 144.938 kb on - strand, within Ga0059261_0154 at 144.938 kb on - strand, within Ga0059261_0154 at 145.007 kb on + strand, within Ga0059261_0154 at 145.007 kb on + strand, within Ga0059261_0154 at 145.008 kb on - strand, within Ga0059261_0154 at 145.008 kb on - strand, within Ga0059261_0154 at 145.008 kb on - strand, within Ga0059261_0154 at 145.008 kb on - strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.058 kb on + strand, within Ga0059261_0154 at 145.059 kb on - strand, within Ga0059261_0154 at 145.059 kb on - strand, within Ga0059261_0154 at 145.059 kb on - strand, within Ga0059261_0154 at 145.059 kb on - strand, within Ga0059261_0154 at 145.079 kb on + strand, within Ga0059261_0154 at 145.079 kb on + strand, within Ga0059261_0154 at 145.079 kb on + strand, within Ga0059261_0154 at 145.079 kb on + strand, within Ga0059261_0154 at 145.079 kb on + strand, within Ga0059261_0154 at 145.079 kb on + strand, within Ga0059261_0154 at 145.079 kb on + strand, within Ga0059261_0154 at 145.080 kb on - strand, within Ga0059261_0154 at 145.080 kb on - strand, within Ga0059261_0154 at 145.080 kb on - strand, within Ga0059261_0154 at 145.080 kb on - strand, within Ga0059261_0154 at 145.080 kb on - strand, within Ga0059261_0154 at 145.080 kb on - strand, within Ga0059261_0154 at 145.241 kb on + strand at 145.241 kb on + strand, within Ga0059261_0154 at 145.241 kb on + strand, within Ga0059261_0154 at 145.241 kb on + strand, within Ga0059261_0154 at 145.242 kb on - strand, within Ga0059261_0154 at 145.242 kb on - strand, within Ga0059261_0154 at 145.242 kb on - strand, within Ga0059261_0154 at 145.242 kb on - strand, within Ga0059261_0154 at 145.242 kb on - strand, within Ga0059261_0154 at 145.405 kb on - strand, within Ga0059261_0154 at 145.405 kb on - strand, within Ga0059261_0154 at 145.460 kb on + strand at 145.460 kb on + strand at 145.460 kb on + strand at 145.460 kb on + strand at 145.460 kb on + strand at 145.460 kb on + strand at 145.461 kb on - strand at 145.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml remove 142,957 + Ga0059261_0150 0.82 -0.7 142,957 + Ga0059261_0150 0.82 -0.5 142,957 + Ga0059261_0150 0.82 -1.2 142,957 + Ga0059261_0150 0.82 +0.8 142,957 + Ga0059261_0150 0.82 -0.0 143,042 + +0.4 143,042 + +1.0 143,042 + -0.6 143,043 - +0.1 143,072 + -0.1 143,072 + -0.4 143,072 + -0.1 143,101 + +0.6 143,106 + -0.4 143,106 + -1.2 143,106 + -0.3 143,106 + +0.8 143,107 - +0.3 143,107 - -0.1 143,107 - +0.2 143,181 + +1.0 143,181 + -2.7 143,182 - -0.5 143,182 - +0.3 143,182 - -0.0 143,182 - -0.4 143,225 + +0.6 143,226 - +0.5 143,226 - -0.4 143,226 - -0.2 143,226 - -1.5 143,226 - +0.3 143,229 + -3.1 143,229 + +0.7 143,229 + +0.3 143,229 + +1.6 143,229 + +0.3 143,230 - -0.6 143,230 - -0.1 143,230 - +0.7 143,230 - -0.0 143,230 - +0.7 143,230 - -2.2 143,230 - +0.3 143,230 - +0.4 143,230 - +0.4 143,233 + +0.7 143,234 - -0.2 143,234 - -2.2 143,234 - -0.3 143,253 + -0.2 143,253 + -1.6 143,254 - -0.2 143,507 + -0.7 143,507 + +0.6 143,507 + +0.6 143,508 - -0.5 143,508 - -1.0 143,513 + -0.4 143,513 + +0.3 143,514 - -1.6 143,514 - -1.2 143,619 + Ga0059261_0152 0.31 -0.3 143,619 + Ga0059261_0152 0.31 +0.1 143,619 + Ga0059261_0152 0.31 -1.1 143,619 + Ga0059261_0152 0.31 +0.5 143,619 + Ga0059261_0152 0.31 +0.7 143,619 + Ga0059261_0152 0.31 -0.2 143,619 + Ga0059261_0152 0.31 -0.1 143,620 - Ga0059261_0152 0.32 -0.6 143,620 - Ga0059261_0152 0.32 -0.6 143,620 - Ga0059261_0152 0.32 +0.2 143,620 - Ga0059261_0152 0.32 -0.4 143,620 - Ga0059261_0152 0.32 +1.2 143,620 - Ga0059261_0152 0.32 +0.2 143,620 - Ga0059261_0152 0.32 -1.0 143,729 + -1.5 143,729 + Ga0059261_0152 0.63 +0.3 143,729 + Ga0059261_0152 0.63 +0.2 143,730 - Ga0059261_0152 0.64 -0.0 143,730 - Ga0059261_0152 0.64 -1.7 143,730 - Ga0059261_0152 0.64 +0.4 143,766 - Ga0059261_0152 0.74 +0.3 143,766 - Ga0059261_0152 0.74 -0.2 143,977 + Ga0059261_0153 0.18 -1.2 143,978 - Ga0059261_0153 0.18 -0.7 143,978 - Ga0059261_0153 0.18 -1.1 143,978 - Ga0059261_0153 0.18 -0.8 144,002 - Ga0059261_0153 0.22 +0.2 144,576 - +0.0 144,576 - +0.6 144,576 - +0.3 144,643 + +0.3 144,643 + -0.0 144,643 + -0.0 144,643 + -0.2 144,644 - -0.7 144,644 - -2.1 144,644 - -0.2 144,644 - -0.6 144,694 + +0.2 144,694 + -0.2 144,695 - -0.3 144,695 - +0.4 144,695 - +0.3 144,822 + Ga0059261_0154 0.13 +0.1 144,822 + Ga0059261_0154 0.13 -0.6 144,822 + Ga0059261_0154 0.13 +0.8 144,937 + Ga0059261_0154 0.28 -0.6 144,938 - Ga0059261_0154 0.28 -0.2 144,938 - Ga0059261_0154 0.28 -0.0 144,938 - Ga0059261_0154 0.28 -0.7 144,938 - Ga0059261_0154 0.28 +0.1 144,938 - Ga0059261_0154 0.28 -0.1 145,007 + Ga0059261_0154 0.37 -0.2 145,007 + Ga0059261_0154 0.37 +0.6 145,008 - Ga0059261_0154 0.37 -0.4 145,008 - Ga0059261_0154 0.37 +0.4 145,008 - Ga0059261_0154 0.37 -0.5 145,008 - Ga0059261_0154 0.37 +0.1 145,058 + Ga0059261_0154 0.44 +0.6 145,058 + Ga0059261_0154 0.44 -0.5 145,058 + Ga0059261_0154 0.44 +0.6 145,058 + Ga0059261_0154 0.44 -1.2 145,058 + Ga0059261_0154 0.44 +1.2 145,058 + Ga0059261_0154 0.44 -0.1 145,058 + Ga0059261_0154 0.44 -0.2 145,058 + Ga0059261_0154 0.44 -0.4 145,058 + Ga0059261_0154 0.44 -0.4 145,058 + Ga0059261_0154 0.44 +0.4 145,058 + Ga0059261_0154 0.44 +1.4 145,059 - Ga0059261_0154 0.44 +0.5 145,059 - Ga0059261_0154 0.44 -0.1 145,059 - Ga0059261_0154 0.44 -0.3 145,059 - Ga0059261_0154 0.44 +0.0 145,079 + Ga0059261_0154 0.47 -0.6 145,079 + Ga0059261_0154 0.47 -0.3 145,079 + Ga0059261_0154 0.47 -0.1 145,079 + Ga0059261_0154 0.47 +0.5 145,079 + Ga0059261_0154 0.47 -1.6 145,079 + Ga0059261_0154 0.47 +0.0 145,079 + Ga0059261_0154 0.47 -0.4 145,080 - Ga0059261_0154 0.47 +1.0 145,080 - Ga0059261_0154 0.47 +1.0 145,080 - Ga0059261_0154 0.47 -0.6 145,080 - Ga0059261_0154 0.47 +0.1 145,080 - Ga0059261_0154 0.47 +0.2 145,080 - Ga0059261_0154 0.47 +1.1 145,241 + +0.8 145,241 + Ga0059261_0154 0.68 +0.5 145,241 + Ga0059261_0154 0.68 +0.3 145,241 + Ga0059261_0154 0.68 -0.6 145,242 - Ga0059261_0154 0.68 +0.8 145,242 - Ga0059261_0154 0.68 -0.2 145,242 - Ga0059261_0154 0.68 -0.3 145,242 - Ga0059261_0154 0.68 +0.2 145,242 - Ga0059261_0154 0.68 -0.7 145,405 - Ga0059261_0154 0.89 -1.2 145,405 - Ga0059261_0154 0.89 -0.2 145,460 + -1.5 145,460 + +0.5 145,460 + +0.3 145,460 + +0.2 145,460 + -0.0 145,460 + +0.4 145,461 - +0.4 145,470 - -0.6
Or see this region's nucleotide sequence