Experiment: Polymyxin B sulfate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0135 and Ga0059261_0136 are separated by 5 nucleotides Ga0059261_0136 and Ga0059261_0137 are separated by 559 nucleotides
Ga0059261_0135: Ga0059261_0135 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 126,942 to 128,318
_0135
Ga0059261_0136: Ga0059261_0136 - Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation, at 128,324 to 130,588
_0136
Ga0059261_0137: Ga0059261_0137 - nitrogen regulation protein NR(I), at 131,148 to 132,593
_0137
Position (kb)
128
129
130
131 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 128.554 kb on + strand, within Ga0059261_0136 at 128.554 kb on + strand at 128.554 kb on + strand at 128.554 kb on + strand at 128.556 kb on + strand, within Ga0059261_0136 at 128.556 kb on + strand at 128.556 kb on + strand at 128.556 kb on + strand at 128.556 kb on + strand at 128.557 kb on - strand, within Ga0059261_0136 at 128.609 kb on + strand at 128.609 kb on + strand at 128.609 kb on + strand at 128.610 kb on - strand, within Ga0059261_0136 at 129.221 kb on - strand, within Ga0059261_0136 at 129.724 kb on - strand, within Ga0059261_0136 at 129.793 kb on - strand at 129.793 kb on - strand at 129.799 kb on - strand, within Ga0059261_0136 at 129.799 kb on - strand at 129.799 kb on - strand, within Ga0059261_0136 at 129.799 kb on - strand at 129.799 kb on - strand, within Ga0059261_0136 at 129.799 kb on - strand at 130.033 kb on - strand, within Ga0059261_0136 at 130.033 kb on - strand, within Ga0059261_0136 at 130.033 kb on - strand, within Ga0059261_0136 at 130.033 kb on - strand, within Ga0059261_0136 at 130.033 kb on - strand, within Ga0059261_0136 at 130.033 kb on - strand, within Ga0059261_0136 at 130.033 kb on - strand, within Ga0059261_0136 at 130.033 kb on - strand, within Ga0059261_0136 at 130.216 kb on - strand, within Ga0059261_0136 at 130.216 kb on - strand, within Ga0059261_0136 at 130.471 kb on - strand at 130.471 kb on - strand at 130.559 kb on - strand at 130.559 kb on - strand at 130.600 kb on + strand at 130.600 kb on + strand at 130.601 kb on - strand at 130.601 kb on - strand at 130.608 kb on - strand at 130.608 kb on - strand at 130.608 kb on - strand at 130.651 kb on - strand at 130.691 kb on + strand at 130.696 kb on + strand at 130.697 kb on - strand at 130.721 kb on + strand at 130.721 kb on + strand at 130.722 kb on - strand at 130.749 kb on - strand at 130.769 kb on + strand at 130.770 kb on - strand at 130.770 kb on - strand at 130.800 kb on + strand at 130.800 kb on + strand at 130.801 kb on - strand at 130.804 kb on + strand at 130.872 kb on + strand at 130.898 kb on - strand at 130.932 kb on + strand at 130.982 kb on + strand at 130.982 kb on + strand at 130.982 kb on + strand at 130.983 kb on - strand at 130.983 kb on - strand at 131.026 kb on + strand at 131.027 kb on - strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.034 kb on + strand at 131.035 kb on - strand at 131.035 kb on - strand at 131.035 kb on - strand at 131.071 kb on - strand at 131.081 kb on + strand at 131.082 kb on - strand at 131.082 kb on - strand at 131.135 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.137 kb on + strand at 131.138 kb on - strand at 131.138 kb on - strand at 131.138 kb on - strand at 131.138 kb on - strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.149 kb on + strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.150 kb on - strand at 131.196 kb on - strand at 131.323 kb on + strand, within Ga0059261_0137 at 131.323 kb on + strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137 at 131.324 kb on - strand, within Ga0059261_0137
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml remove 128,554 + Ga0059261_0136 0.10 -1.2 128,554 + -1.5 128,554 + +0.8 128,554 + -0.7 128,556 + Ga0059261_0136 0.10 -0.7 128,556 + -1.2 128,556 + -1.2 128,556 + -0.7 128,556 + -0.2 128,557 - Ga0059261_0136 0.10 -0.6 128,609 + -0.2 128,609 + +0.8 128,609 + -1.2 128,610 - Ga0059261_0136 0.13 -1.5 129,221 - Ga0059261_0136 0.40 -1.0 129,724 - Ga0059261_0136 0.62 -1.2 129,793 - +0.8 129,793 - -0.2 129,799 - Ga0059261_0136 0.65 -0.6 129,799 - +1.8 129,799 - Ga0059261_0136 0.65 -1.2 129,799 - -0.7 129,799 - Ga0059261_0136 0.65 -1.6 129,799 - -1.2 130,033 - Ga0059261_0136 0.75 -1.0 130,033 - Ga0059261_0136 0.75 -0.2 130,033 - Ga0059261_0136 0.75 -0.6 130,033 - Ga0059261_0136 0.75 +0.6 130,033 - Ga0059261_0136 0.75 +0.6 130,033 - Ga0059261_0136 0.75 +1.2 130,033 - Ga0059261_0136 0.75 -1.3 130,033 - Ga0059261_0136 0.75 +0.4 130,216 - Ga0059261_0136 0.84 +0.3 130,216 - Ga0059261_0136 0.84 -1.2 130,471 - -1.0 130,471 - +0.3 130,559 - -2.2 130,559 - +0.7 130,600 + -1.7 130,600 + -1.5 130,601 - -0.7 130,601 - -1.2 130,608 - -0.6 130,608 - -0.2 130,608 - -0.7 130,651 - -0.5 130,691 + -0.5 130,696 + -0.5 130,697 - +0.9 130,721 + -0.6 130,721 + -0.9 130,722 - +0.8 130,749 - +0.2 130,769 + +0.1 130,770 - -0.6 130,770 - +0.8 130,800 + -0.8 130,800 + -0.4 130,801 - -0.7 130,804 + -1.9 130,872 + +0.2 130,898 - -2.2 130,932 + -0.4 130,982 + +0.5 130,982 + +0.2 130,982 + +0.5 130,983 - +0.0 130,983 - +0.9 131,026 + +0.2 131,027 - -0.0 131,034 + -0.1 131,034 + +0.1 131,034 + -0.3 131,034 + -0.3 131,034 + +0.3 131,035 - -0.4 131,035 - +0.6 131,035 - +0.2 131,071 - +0.3 131,081 + +0.8 131,082 - +0.5 131,082 - -0.8 131,135 + -0.5 131,137 + +0.6 131,137 + -0.6 131,137 + -1.5 131,137 + +0.4 131,137 + +0.6 131,138 - +0.4 131,138 - -0.6 131,138 - +0.8 131,138 - +2.6 131,149 + -0.6 131,149 + +0.3 131,149 + -0.3 131,149 + -0.5 131,149 + +1.1 131,149 + +1.3 131,149 + -0.2 131,149 + -0.7 131,149 + -0.3 131,150 - -0.3 131,150 - -0.3 131,150 - -1.2 131,150 - +1.3 131,150 - -0.1 131,150 - -0.0 131,150 - -0.4 131,196 - +0.4 131,323 + Ga0059261_0137 0.12 -0.6 131,323 + Ga0059261_0137 0.12 +2.6 131,324 - Ga0059261_0137 0.12 -0.9 131,324 - Ga0059261_0137 0.12 -0.3 131,324 - Ga0059261_0137 0.12 -0.2 131,324 - Ga0059261_0137 0.12 -0.2
Or see this region's nucleotide sequence