Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0119

Experiment: Polymyxin B sulfate 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0119 and Ga0059261_0120 are separated by 106 nucleotides Ga0059261_0119: Ga0059261_0119 - tRNA, at 113,930 to 114,019 _0119 Ga0059261_0120: Ga0059261_0120 - lytic murein transglycosylase, at 114,126 to 115,178 _0120 Position (kb) 113 114 115Strain fitness (log2 ratio) -2 -1 0 1 2at 112.937 kb on - strandat 112.964 kb on + strandat 112.964 kb on + strandat 112.964 kb on + strandat 112.964 kb on + strandat 112.965 kb on - strandat 112.965 kb on - strandat 112.977 kb on + strandat 112.978 kb on - strandat 112.978 kb on - strandat 112.992 kb on + strandat 112.993 kb on - strandat 112.994 kb on + strandat 112.994 kb on + strandat 112.995 kb on - strandat 112.995 kb on - strandat 112.995 kb on - strandat 112.995 kb on - strandat 112.995 kb on - strandat 112.995 kb on - strandat 112.995 kb on - strandat 112.995 kb on - strandat 112.995 kb on - strandat 113.028 kb on + strandat 113.028 kb on + strandat 113.029 kb on - strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.112 kb on + strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.113 kb on - strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.116 kb on + strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.117 kb on - strandat 113.118 kb on + strandat 113.118 kb on + strandat 113.119 kb on - strandat 113.122 kb on + strandat 113.123 kb on - strandat 113.123 kb on - strandat 113.123 kb on - strandat 113.162 kb on + strandat 113.163 kb on - strandat 113.163 kb on - strandat 113.163 kb on - strandat 113.163 kb on - strandat 113.163 kb on - strandat 113.268 kb on + strandat 113.268 kb on + strandat 113.268 kb on + strandat 113.268 kb on + strandat 113.268 kb on + strandat 113.268 kb on + strandat 113.268 kb on + strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.269 kb on - strandat 113.284 kb on + strandat 113.284 kb on + strandat 113.284 kb on + strandat 113.284 kb on + strandat 113.284 kb on + strandat 113.285 kb on - strandat 113.285 kb on - strandat 113.285 kb on - strandat 113.285 kb on - strandat 113.358 kb on - strandat 113.358 kb on - strandat 113.383 kb on + strandat 113.383 kb on + strandat 113.383 kb on + strandat 113.383 kb on + strandat 113.384 kb on - strandat 113.384 kb on - strandat 113.384 kb on - strandat 113.397 kb on + strandat 113.397 kb on + strandat 113.398 kb on - strandat 113.418 kb on + strandat 113.418 kb on + strandat 113.418 kb on + strandat 113.418 kb on + strandat 113.418 kb on + strandat 113.418 kb on + strandat 113.419 kb on - strandat 113.419 kb on - strandat 113.419 kb on - strandat 113.442 kb on - strandat 113.538 kb on - strandat 113.538 kb on - strandat 113.538 kb on - strandat 113.553 kb on + strandat 113.553 kb on + strandat 113.554 kb on - strandat 113.554 kb on - strandat 113.554 kb on - strandat 113.554 kb on - strandat 113.575 kb on - strandat 113.611 kb on + strandat 113.644 kb on + strandat 113.644 kb on + strandat 113.644 kb on + strandat 113.645 kb on - strandat 113.645 kb on - strandat 113.645 kb on - strandat 113.648 kb on + strandat 113.649 kb on - strandat 113.649 kb on - strandat 113.664 kb on - strandat 113.706 kb on + strandat 113.706 kb on + strandat 113.706 kb on + strandat 113.707 kb on - strandat 113.736 kb on + strandat 113.736 kb on + strandat 113.737 kb on - strandat 113.741 kb on - strandat 113.741 kb on - strandat 113.744 kb on - strandat 113.744 kb on - strandat 113.769 kb on + strandat 113.769 kb on + strandat 113.769 kb on + strandat 113.770 kb on - strandat 113.833 kb on + strandat 114.148 kb on + strandat 114.149 kb on - strandat 114.149 kb on - strandat 114.149 kb on - strandat 114.149 kb on - strandat 114.155 kb on + strandat 114.155 kb on + strandat 114.155 kb on + strandat 114.155 kb on + strandat 114.156 kb on - strandat 114.188 kb on + strandat 114.188 kb on + strandat 114.189 kb on - strandat 114.189 kb on - strandat 114.189 kb on - strandat 114.189 kb on - strandat 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.240 kb on + strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.241 kb on - strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.242 kb on + strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.243 kb on - strand, within Ga0059261_0120at 114.324 kb on + strand, within Ga0059261_0120at 114.405 kb on + strand, within Ga0059261_0120at 114.405 kb on + strand, within Ga0059261_0120at 114.406 kb on - strand, within Ga0059261_0120at 114.456 kb on + strand, within Ga0059261_0120at 114.457 kb on - strand, within Ga0059261_0120at 114.549 kb on + strand, within Ga0059261_0120at 114.549 kb on + strand, within Ga0059261_0120at 114.549 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strand, within Ga0059261_0120at 114.558 kb on + strandat 114.559 kb on - strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.603 kb on + strand, within Ga0059261_0120at 114.604 kb on - strand, within Ga0059261_0120at 114.717 kb on + strand, within Ga0059261_0120at 114.741 kb on + strand, within Ga0059261_0120at 114.741 kb on + strand, within Ga0059261_0120at 114.741 kb on + strand, within Ga0059261_0120at 114.742 kb on - strand, within Ga0059261_0120at 114.742 kb on - strand, within Ga0059261_0120at 114.742 kb on - strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.828 kb on + strand, within Ga0059261_0120at 114.829 kb on - strand, within Ga0059261_0120at 114.921 kb on - strand, within Ga0059261_0120

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml
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112,937 - -0.4
112,964 + +0.5
112,964 + +0.0
112,964 + +1.2
112,964 + +0.4
112,965 - -0.5
112,965 - -0.7
112,977 + +0.2
112,978 - +0.8
112,978 - -0.5
112,992 + +0.0
112,993 - -0.8
112,994 + -0.6
112,994 + -1.7
112,995 - +0.1
112,995 - +0.8
112,995 - +0.1
112,995 - +0.7
112,995 - +0.1
112,995 - -0.5
112,995 - +1.0
112,995 - -0.8
112,995 - +0.3
113,028 + +0.3
113,028 + +0.3
113,029 - -1.0
113,112 + -0.0
113,112 + +0.7
113,112 + -0.2
113,112 + +1.7
113,113 - +0.8
113,113 - -0.7
113,113 - -0.3
113,113 - +0.2
113,116 + -0.0
113,116 + -0.1
113,116 + -0.1
113,116 + -0.8
113,116 + -0.7
113,116 + -1.9
113,116 + -0.4
113,116 + +0.4
113,116 + +0.4
113,116 + -0.8
113,116 + +0.1
113,116 + +0.1
113,116 + +0.7
113,116 + +0.6
113,116 + +0.1
113,116 + +0.4
113,117 - +0.7
113,117 - -0.8
113,117 - -0.4
113,117 - +1.0
113,117 - +0.6
113,117 - +0.4
113,117 - +0.7
113,117 - -0.4
113,117 - -0.6
113,117 - -0.2
113,117 - +0.3
113,117 - -0.5
113,117 - +1.1
113,117 - -0.7
113,117 - +0.5
113,117 - +0.3
113,117 - -0.2
113,117 - +0.4
113,118 + -0.4
113,118 + -0.7
113,119 - -0.6
113,122 + -0.2
113,123 - -0.4
113,123 - -0.2
113,123 - -1.6
113,162 + -0.0
113,163 - +0.8
113,163 - -0.3
113,163 - +0.8
113,163 - -0.6
113,163 - -0.5
113,268 + +0.6
113,268 + -0.2
113,268 + -0.2
113,268 + +0.3
113,268 + -0.3
113,268 + +0.9
113,268 + -0.3
113,269 - -0.0
113,269 - +0.7
113,269 - -0.6
113,269 - -0.1
113,269 - +0.1
113,269 - +0.1
113,269 - -0.0
113,269 - +0.2
113,269 - -0.2
113,284 + +0.4
113,284 + -1.2
113,284 + -0.6
113,284 + -0.4
113,284 + -0.0
113,285 - -1.0
113,285 - +0.1
113,285 - -0.7
113,285 - +0.5
113,358 - -1.2
113,358 - +0.3
113,383 + -0.3
113,383 + +0.7
113,383 + +0.4
113,383 + -0.6
113,384 - -0.2
113,384 - -0.1
113,384 - -0.5
113,397 + -0.9
113,397 + -0.9
113,398 - -0.2
113,418 + -0.3
113,418 + -0.3
113,418 + +0.8
113,418 + +0.5
113,418 + +0.2
113,418 + -0.3
113,419 - -0.3
113,419 - -0.3
113,419 - -0.2
113,442 - +0.4
113,538 - -0.5
113,538 - -0.2
113,538 - -1.0
113,553 + -0.7
113,553 + -0.0
113,554 - +1.8
113,554 - -1.4
113,554 - +1.4
113,554 - -0.0
113,575 - -0.3
113,611 + -0.2
113,644 + -0.5
113,644 + +0.5
113,644 + -0.7
113,645 - +0.3
113,645 - -0.1
113,645 - -0.2
113,648 + -0.2
113,649 - -0.2
113,649 - +0.5
113,664 - -0.2
113,706 + +1.0
113,706 + +0.3
113,706 + -0.1
113,707 - +0.4
113,736 + +0.2
113,736 + +0.0
113,737 - +0.3
113,741 - +0.8
113,741 - -0.2
113,744 - +0.1
113,744 - -0.2
113,769 + +1.2
113,769 + +0.4
113,769 + +0.8
113,770 - -1.1
113,833 + -0.2
114,148 + -0.5
114,149 - +1.8
114,149 - -0.2
114,149 - -0.2
114,149 - +2.0
114,155 + -0.3
114,155 + -1.0
114,155 + -0.3
114,155 + -0.1
114,156 - +1.3
114,188 + +2.4
114,188 + +0.5
114,189 - +0.4
114,189 - -0.2
114,189 - +0.8
114,189 - -1.3
114,240 + Ga0059261_0120 0.11 -1.2
114,240 + Ga0059261_0120 0.11 +1.1
114,240 + Ga0059261_0120 0.11 +0.5
114,240 + Ga0059261_0120 0.11 -0.5
114,240 + Ga0059261_0120 0.11 +0.3
114,240 + Ga0059261_0120 0.11 -0.4
114,240 + Ga0059261_0120 0.11 -0.6
114,240 + Ga0059261_0120 0.11 +0.2
114,240 + Ga0059261_0120 0.11 -0.1
114,240 + Ga0059261_0120 0.11 -0.7
114,240 + Ga0059261_0120 0.11 -0.9
114,240 + Ga0059261_0120 0.11 -1.2
114,240 + Ga0059261_0120 0.11 +0.0
114,241 - Ga0059261_0120 0.11 -1.7
114,241 - Ga0059261_0120 0.11 +0.7
114,241 - Ga0059261_0120 0.11 +0.8
114,241 - Ga0059261_0120 0.11 -0.2
114,241 - Ga0059261_0120 0.11 +0.4
114,241 - Ga0059261_0120 0.11 -0.8
114,241 - Ga0059261_0120 0.11 -0.2
114,241 - Ga0059261_0120 0.11 +0.6
114,242 + Ga0059261_0120 0.11 -0.2
114,242 + Ga0059261_0120 0.11 -1.1
114,242 + Ga0059261_0120 0.11 -0.2
114,242 + Ga0059261_0120 0.11 -0.1
114,242 + Ga0059261_0120 0.11 -0.9
114,242 + Ga0059261_0120 0.11 +0.8
114,242 + Ga0059261_0120 0.11 -0.7
114,243 - Ga0059261_0120 0.11 -0.7
114,243 - Ga0059261_0120 0.11 +0.8
114,243 - Ga0059261_0120 0.11 -0.1
114,243 - Ga0059261_0120 0.11 -0.1
114,324 + Ga0059261_0120 0.19 -0.2
114,405 + Ga0059261_0120 0.26 -0.3
114,405 + Ga0059261_0120 0.26 +0.3
114,406 - Ga0059261_0120 0.27 -1.6
114,456 + Ga0059261_0120 0.31 -1.0
114,457 - Ga0059261_0120 0.31 -1.2
114,549 + Ga0059261_0120 0.40 -0.2
114,549 + Ga0059261_0120 0.40 -0.0
114,549 + Ga0059261_0120 0.40 -0.3
114,558 + Ga0059261_0120 0.41 -0.4
114,558 + Ga0059261_0120 0.41 -0.0
114,558 + Ga0059261_0120 0.41 +0.8
114,558 + Ga0059261_0120 0.41 +0.2
114,558 + Ga0059261_0120 0.41 -0.2
114,558 + -0.7
114,559 - Ga0059261_0120 0.41 +0.4
114,603 + Ga0059261_0120 0.45 -1.7
114,603 + Ga0059261_0120 0.45 +0.3
114,603 + Ga0059261_0120 0.45 -1.0
114,603 + Ga0059261_0120 0.45 -0.4
114,603 + Ga0059261_0120 0.45 +0.6
114,603 + Ga0059261_0120 0.45 -0.8
114,604 - Ga0059261_0120 0.45 -1.2
114,717 + Ga0059261_0120 0.56 -1.2
114,741 + Ga0059261_0120 0.58 -0.1
114,741 + Ga0059261_0120 0.58 -0.1
114,741 + Ga0059261_0120 0.58 -0.3
114,742 - Ga0059261_0120 0.58 -0.9
114,742 - Ga0059261_0120 0.58 +0.3
114,742 - Ga0059261_0120 0.58 -1.0
114,828 + Ga0059261_0120 0.67 -0.3
114,828 + Ga0059261_0120 0.67 +0.1
114,828 + Ga0059261_0120 0.67 -0.5
114,828 + Ga0059261_0120 0.67 +0.4
114,828 + Ga0059261_0120 0.67 -1.3
114,828 + Ga0059261_0120 0.67 -0.0
114,829 - Ga0059261_0120 0.67 -2.1
114,921 - Ga0059261_0120 0.75 -2.2

Or see this region's nucleotide sequence