Experiment: Polymyxin B sulfate 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0086 and Ga0059261_0087 are separated by 15 nucleotides Ga0059261_0087 and Ga0059261_0088 are separated by 158 nucleotides Ga0059261_0088 and Ga0059261_0089 are separated by 70 nucleotides Ga0059261_0089 and Ga0059261_0090 are separated by 136 nucleotides
Ga0059261_0086: Ga0059261_0086 - hypothetical protein, at 79,412 to 80,038
_0086
Ga0059261_0087: Ga0059261_0087 - hypothetical protein, at 80,054 to 80,242
_0087
Ga0059261_0088: Ga0059261_0088 - tRNA, at 80,401 to 80,485
_0088
Ga0059261_0089: Ga0059261_0089 - trigger factor, at 80,556 to 82,166
_0089
Ga0059261_0090: Ga0059261_0090 - Glycosyltransferases involved in cell wall biogenesis, at 82,303 to 83,232
_0090
Position (kb)
80
81
82
83 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 79.576 kb on + strand, within Ga0059261_0086 at 79.585 kb on + strand, within Ga0059261_0086 at 79.585 kb on + strand, within Ga0059261_0086 at 79.585 kb on + strand, within Ga0059261_0086 at 79.585 kb on + strand, within Ga0059261_0086 at 79.585 kb on + strand, within Ga0059261_0086 at 79.610 kb on + strand, within Ga0059261_0086 at 79.610 kb on + strand, within Ga0059261_0086 at 79.611 kb on - strand, within Ga0059261_0086 at 79.668 kb on + strand, within Ga0059261_0086 at 79.699 kb on + strand, within Ga0059261_0086 at 79.739 kb on + strand, within Ga0059261_0086 at 79.740 kb on - strand, within Ga0059261_0086 at 79.771 kb on + strand, within Ga0059261_0086 at 79.772 kb on - strand, within Ga0059261_0086 at 79.772 kb on - strand, within Ga0059261_0086 at 79.865 kb on + strand, within Ga0059261_0086 at 79.865 kb on + strand, within Ga0059261_0086 at 79.865 kb on + strand, within Ga0059261_0086 at 79.866 kb on - strand, within Ga0059261_0086 at 79.917 kb on + strand at 79.917 kb on + strand, within Ga0059261_0086 at 79.927 kb on + strand, within Ga0059261_0086 at 79.933 kb on + strand, within Ga0059261_0086 at 79.934 kb on - strand, within Ga0059261_0086 at 79.934 kb on - strand, within Ga0059261_0086 at 79.934 kb on - strand, within Ga0059261_0086 at 79.934 kb on - strand, within Ga0059261_0086 at 79.934 kb on - strand, within Ga0059261_0086 at 79.934 kb on - strand, within Ga0059261_0086 at 79.934 kb on - strand at 79.934 kb on - strand, within Ga0059261_0086 at 79.956 kb on + strand, within Ga0059261_0086 at 79.956 kb on + strand, within Ga0059261_0086 at 79.957 kb on - strand, within Ga0059261_0086 at 79.969 kb on + strand, within Ga0059261_0086 at 79.969 kb on + strand, within Ga0059261_0086 at 79.969 kb on + strand, within Ga0059261_0086 at 79.970 kb on - strand, within Ga0059261_0086 at 79.970 kb on - strand, within Ga0059261_0086 at 79.970 kb on - strand, within Ga0059261_0086 at 79.970 kb on - strand, within Ga0059261_0086 at 79.970 kb on - strand, within Ga0059261_0086 at 79.975 kb on + strand, within Ga0059261_0086 at 79.976 kb on - strand at 80.012 kb on + strand at 80.013 kb on - strand at 80.049 kb on + strand at 80.100 kb on - strand, within Ga0059261_0087 at 80.111 kb on + strand, within Ga0059261_0087 at 80.112 kb on - strand, within Ga0059261_0087 at 80.368 kb on + strand at 80.368 kb on + strand at 80.368 kb on + strand at 80.370 kb on + strand at 80.370 kb on + strand at 80.599 kb on - strand at 80.624 kb on + strand at 81.225 kb on + strand, within Ga0059261_0089 at 81.236 kb on + strand, within Ga0059261_0089 at 81.408 kb on - strand, within Ga0059261_0089 at 81.411 kb on + strand, within Ga0059261_0089 at 81.411 kb on + strand, within Ga0059261_0089 at 81.411 kb on + strand, within Ga0059261_0089 at 81.411 kb on + strand at 81.411 kb on + strand at 81.411 kb on + strand, within Ga0059261_0089 at 81.411 kb on + strand, within Ga0059261_0089 at 81.411 kb on + strand, within Ga0059261_0089 at 81.411 kb on + strand, within Ga0059261_0089 at 81.412 kb on - strand, within Ga0059261_0089 at 81.412 kb on - strand, within Ga0059261_0089 at 81.412 kb on - strand, within Ga0059261_0089 at 81.412 kb on - strand, within Ga0059261_0089 at 81.412 kb on - strand, within Ga0059261_0089 at 81.413 kb on + strand, within Ga0059261_0089 at 81.413 kb on + strand, within Ga0059261_0089 at 81.413 kb on + strand, within Ga0059261_0089 at 81.414 kb on - strand, within Ga0059261_0089 at 81.558 kb on + strand, within Ga0059261_0089 at 81.705 kb on + strand, within Ga0059261_0089 at 81.705 kb on + strand, within Ga0059261_0089 at 81.706 kb on - strand, within Ga0059261_0089 at 81.738 kb on + strand, within Ga0059261_0089 at 81.738 kb on + strand, within Ga0059261_0089 at 81.739 kb on - strand, within Ga0059261_0089 at 81.739 kb on - strand at 81.786 kb on + strand, within Ga0059261_0089 at 82.164 kb on + strand at 82.164 kb on + strand at 82.164 kb on + strand at 82.165 kb on - strand at 82.165 kb on - strand at 82.165 kb on - strand at 82.245 kb on + strand at 82.246 kb on - strand at 82.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.05 mg/ml remove 79,576 + Ga0059261_0086 0.26 +0.1 79,585 + Ga0059261_0086 0.28 -0.1 79,585 + Ga0059261_0086 0.28 -0.3 79,585 + Ga0059261_0086 0.28 -0.5 79,585 + Ga0059261_0086 0.28 +0.6 79,585 + Ga0059261_0086 0.28 -0.3 79,610 + Ga0059261_0086 0.32 +0.1 79,610 + Ga0059261_0086 0.32 -0.7 79,611 - Ga0059261_0086 0.32 -0.3 79,668 + Ga0059261_0086 0.41 -0.5 79,699 + Ga0059261_0086 0.46 +0.5 79,739 + Ga0059261_0086 0.52 +0.3 79,740 - Ga0059261_0086 0.52 +0.5 79,771 + Ga0059261_0086 0.57 +0.0 79,772 - Ga0059261_0086 0.57 +0.4 79,772 - Ga0059261_0086 0.57 -1.4 79,865 + Ga0059261_0086 0.72 -0.3 79,865 + Ga0059261_0086 0.72 +0.8 79,865 + Ga0059261_0086 0.72 +0.3 79,866 - Ga0059261_0086 0.72 -0.1 79,917 + +0.8 79,917 + Ga0059261_0086 0.81 -0.1 79,927 + Ga0059261_0086 0.82 -0.9 79,933 + Ga0059261_0086 0.83 -0.2 79,934 - Ga0059261_0086 0.83 +0.4 79,934 - Ga0059261_0086 0.83 +0.4 79,934 - Ga0059261_0086 0.83 +0.2 79,934 - Ga0059261_0086 0.83 +0.0 79,934 - Ga0059261_0086 0.83 -0.6 79,934 - Ga0059261_0086 0.83 +1.3 79,934 - +0.3 79,934 - Ga0059261_0086 0.83 +0.0 79,956 + Ga0059261_0086 0.87 -0.0 79,956 + Ga0059261_0086 0.87 +0.8 79,957 - Ga0059261_0086 0.87 -0.1 79,969 + Ga0059261_0086 0.89 +0.1 79,969 + Ga0059261_0086 0.89 +0.3 79,969 + Ga0059261_0086 0.89 -0.3 79,970 - Ga0059261_0086 0.89 +0.7 79,970 - Ga0059261_0086 0.89 +0.2 79,970 - Ga0059261_0086 0.89 +0.6 79,970 - Ga0059261_0086 0.89 +0.4 79,970 - Ga0059261_0086 0.89 -0.4 79,975 + Ga0059261_0086 0.90 -0.2 79,976 - -0.0 80,012 + +0.4 80,013 - -0.3 80,049 + -0.3 80,100 - Ga0059261_0087 0.24 +0.1 80,111 + Ga0059261_0087 0.30 -0.6 80,112 - Ga0059261_0087 0.31 +0.4 80,368 + -0.1 80,368 + -0.3 80,368 + -0.2 80,370 + +0.6 80,370 + -1.0 80,599 - -2.3 80,624 + -0.9 81,225 + Ga0059261_0089 0.42 -0.2 81,236 + Ga0059261_0089 0.42 -0.1 81,408 - Ga0059261_0089 0.53 +2.2 81,411 + Ga0059261_0089 0.53 -2.0 81,411 + Ga0059261_0089 0.53 -0.3 81,411 + Ga0059261_0089 0.53 +0.6 81,411 + +0.8 81,411 + +2.2 81,411 + Ga0059261_0089 0.53 -0.4 81,411 + Ga0059261_0089 0.53 -1.5 81,411 + Ga0059261_0089 0.53 -1.5 81,411 + Ga0059261_0089 0.53 -0.2 81,412 - Ga0059261_0089 0.53 -2.2 81,412 - Ga0059261_0089 0.53 -0.2 81,412 - Ga0059261_0089 0.53 -0.9 81,412 - Ga0059261_0089 0.53 -0.7 81,412 - Ga0059261_0089 0.53 -0.7 81,413 + Ga0059261_0089 0.53 -1.2 81,413 + Ga0059261_0089 0.53 -1.3 81,413 + Ga0059261_0089 0.53 -0.9 81,414 - Ga0059261_0089 0.53 -1.2 81,558 + Ga0059261_0089 0.62 -1.7 81,705 + Ga0059261_0089 0.71 -0.5 81,705 + Ga0059261_0089 0.71 -0.5 81,706 - Ga0059261_0089 0.71 -0.5 81,738 + Ga0059261_0089 0.73 +0.5 81,738 + Ga0059261_0089 0.73 -0.2 81,739 - Ga0059261_0089 0.73 -1.2 81,739 - -0.2 81,786 + Ga0059261_0089 0.76 +2.8 82,164 + -0.1 82,164 + +0.1 82,164 + +0.0 82,165 - -0.7 82,165 - +0.1 82,165 - -1.5 82,245 + +0.4 82,246 - +1.3 82,291 + +0.4
Or see this region's nucleotide sequence