Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31945

Experiment: Chlorite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS31940 and AZOBR_RS31945 are separated by 162 nucleotidesAZOBR_RS31945 and AZOBR_RS31950 are separated by 41 nucleotides AZOBR_RS31940: AZOBR_RS31940 - NADH-quinone oxidoreductase subunit F, at 531,320 to 533,005 _RS31940 AZOBR_RS31945: AZOBR_RS31945 - oxalyl-CoA decarboxylase, at 533,168 to 534,925 _RS31945 AZOBR_RS31950: AZOBR_RS31950 - GntR family transcriptional regulator, at 534,967 to 535,656 _RS31950 Position (kb) 533 534 535Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 532.239 kb on + strand, within AZOBR_RS31940at 532.239 kb on + strand, within AZOBR_RS31940at 532.240 kb on - strand, within AZOBR_RS31940at 532.240 kb on - strand, within AZOBR_RS31940at 532.240 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.243 kb on - strand, within AZOBR_RS31940at 532.461 kb on + strand, within AZOBR_RS31940at 532.461 kb on + strand, within AZOBR_RS31940at 532.462 kb on - strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.479 kb on + strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.480 kb on - strand, within AZOBR_RS31940at 532.765 kb on - strand, within AZOBR_RS31940at 532.765 kb on - strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.782 kb on + strand, within AZOBR_RS31940at 532.783 kb on - strand, within AZOBR_RS31940at 532.851 kb on + strandat 532.852 kb on - strandat 533.087 kb on + strandat 533.153 kb on + strandat 533.154 kb on - strandat 533.154 kb on - strandat 533.158 kb on + strandat 533.169 kb on + strandat 533.169 kb on + strandat 533.170 kb on - strandat 533.170 kb on - strandat 533.170 kb on - strandat 533.308 kb on - strandat 533.442 kb on + strand, within AZOBR_RS31945at 533.442 kb on + strand, within AZOBR_RS31945at 533.442 kb on + strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.443 kb on - strand, within AZOBR_RS31945at 533.488 kb on - strand, within AZOBR_RS31945at 533.488 kb on - strand, within AZOBR_RS31945at 534.397 kb on - strand, within AZOBR_RS31945at 534.531 kb on + strand, within AZOBR_RS31945at 534.531 kb on + strand, within AZOBR_RS31945at 534.531 kb on + strand, within AZOBR_RS31945at 534.532 kb on - strand, within AZOBR_RS31945at 534.804 kb on + strandat 534.804 kb on + strandat 534.804 kb on + strandat 534.804 kb on + strandat 534.804 kb on + strandat 534.804 kb on + strandat 534.805 kb on - strandat 534.805 kb on - strandat 534.925 kb on + strandat 534.925 kb on + strandat 534.925 kb on + strandat 534.925 kb on + strandat 534.925 kb on + strandat 534.926 kb on - strandat 534.932 kb on + strandat 534.933 kb on - strandat 534.933 kb on - strandat 534.949 kb on + strandat 534.950 kb on - strandat 535.553 kb on + strand, within AZOBR_RS31950at 535.553 kb on + strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.554 kb on - strand, within AZOBR_RS31950at 535.593 kb on - strandat 535.593 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
remove
532,239 + AZOBR_RS31940 0.55 +0.4
532,239 + AZOBR_RS31940 0.55 +0.2
532,240 - AZOBR_RS31940 0.55 +0.6
532,240 - AZOBR_RS31940 0.55 +0.8
532,240 - AZOBR_RS31940 0.55 -1.3
532,243 - AZOBR_RS31940 0.55 -0.2
532,243 - AZOBR_RS31940 0.55 -0.1
532,243 - AZOBR_RS31940 0.55 +0.8
532,243 - AZOBR_RS31940 0.55 +0.2
532,243 - AZOBR_RS31940 0.55 -0.7
532,461 + AZOBR_RS31940 0.68 -0.4
532,461 + AZOBR_RS31940 0.68 +1.2
532,462 - AZOBR_RS31940 0.68 -1.1
532,479 + AZOBR_RS31940 0.69 -1.5
532,479 + AZOBR_RS31940 0.69 -0.3
532,479 + AZOBR_RS31940 0.69 +0.2
532,479 + AZOBR_RS31940 0.69 -2.6
532,479 + AZOBR_RS31940 0.69 +0.5
532,479 + AZOBR_RS31940 0.69 -0.1
532,479 + AZOBR_RS31940 0.69 +0.3
532,479 + AZOBR_RS31940 0.69 -0.9
532,479 + AZOBR_RS31940 0.69 +0.1
532,479 + AZOBR_RS31940 0.69 -0.0
532,479 + AZOBR_RS31940 0.69 -0.3
532,480 - AZOBR_RS31940 0.69 -1.7
532,480 - AZOBR_RS31940 0.69 +0.5
532,480 - AZOBR_RS31940 0.69 -3.1
532,480 - AZOBR_RS31940 0.69 +0.3
532,480 - AZOBR_RS31940 0.69 -0.3
532,480 - AZOBR_RS31940 0.69 +0.9
532,765 - AZOBR_RS31940 0.86 -0.3
532,765 - AZOBR_RS31940 0.86 -2.5
532,782 + AZOBR_RS31940 0.87 -0.5
532,782 + AZOBR_RS31940 0.87 -0.0
532,782 + AZOBR_RS31940 0.87 -0.2
532,782 + AZOBR_RS31940 0.87 -0.5
532,782 + AZOBR_RS31940 0.87 +1.1
532,783 - AZOBR_RS31940 0.87 -0.1
532,851 + +1.8
532,852 - +0.3
533,087 + +0.4
533,153 + -2.3
533,154 - +0.1
533,154 - -0.0
533,158 + +1.0
533,169 + -0.3
533,169 + +1.4
533,170 - -0.7
533,170 - -1.3
533,170 - -0.8
533,308 - -0.6
533,442 + AZOBR_RS31945 0.16 +0.0
533,442 + AZOBR_RS31945 0.16 +0.7
533,442 + AZOBR_RS31945 0.16 -0.7
533,443 - AZOBR_RS31945 0.16 +2.5
533,443 - AZOBR_RS31945 0.16 -0.2
533,443 - AZOBR_RS31945 0.16 +1.4
533,443 - AZOBR_RS31945 0.16 -1.3
533,443 - AZOBR_RS31945 0.16 +0.9
533,443 - AZOBR_RS31945 0.16 +0.4
533,443 - AZOBR_RS31945 0.16 -1.5
533,488 - AZOBR_RS31945 0.18 +0.1
533,488 - AZOBR_RS31945 0.18 -0.4
534,397 - AZOBR_RS31945 0.70 +0.6
534,531 + AZOBR_RS31945 0.78 -0.1
534,531 + AZOBR_RS31945 0.78 +0.9
534,531 + AZOBR_RS31945 0.78 -2.8
534,532 - AZOBR_RS31945 0.78 -0.4
534,804 + +0.4
534,804 + +0.4
534,804 + -0.4
534,804 + -0.5
534,804 + -0.5
534,804 + +0.5
534,805 - +1.1
534,805 - -0.7
534,925 + +0.5
534,925 + -0.7
534,925 + +2.3
534,925 + -0.0
534,925 + +1.3
534,926 - +0.2
534,932 + -3.8
534,933 - -2.5
534,933 - -1.0
534,949 + -0.2
534,950 - -0.2
535,553 + AZOBR_RS31950 0.85 -0.5
535,553 + AZOBR_RS31950 0.85 -0.1
535,554 - AZOBR_RS31950 0.85 +0.6
535,554 - AZOBR_RS31950 0.85 +0.8
535,554 - AZOBR_RS31950 0.85 +0.5
535,554 - AZOBR_RS31950 0.85 +1.1
535,593 - +0.1
535,593 - -0.3

Or see this region's nucleotide sequence