Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30535

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30535 and AZOBR_RS30540 are separated by 536 nucleotides AZOBR_RS30535: AZOBR_RS30535 - tRNA-Met, at 200,147 to 200,223 _RS30535 AZOBR_RS30540: AZOBR_RS30540 - hypothetical protein, at 200,760 to 201,452 _RS30540 Position (kb) 200 201Strain fitness (log2 ratio) -2 -1 0 1at 200.402 kb on + strandat 200.550 kb on + strandat 200.551 kb on - strandat 200.841 kb on + strand, within AZOBR_RS30540at 200.841 kb on + strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.842 kb on - strand, within AZOBR_RS30540at 200.860 kb on + strand, within AZOBR_RS30540at 200.860 kb on + strand, within AZOBR_RS30540at 200.860 kb on + strand, within AZOBR_RS30540at 200.861 kb on - strand, within AZOBR_RS30540at 200.861 kb on - strand, within AZOBR_RS30540at 201.031 kb on + strand, within AZOBR_RS30540at 201.032 kb on - strand, within AZOBR_RS30540at 201.032 kb on - strand, within AZOBR_RS30540

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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200,402 + +1.2
200,550 + -2.3
200,551 - -0.1
200,841 + AZOBR_RS30540 0.12 +0.5
200,841 + AZOBR_RS30540 0.12 -0.4
200,842 - AZOBR_RS30540 0.12 -1.7
200,842 - AZOBR_RS30540 0.12 +0.0
200,842 - AZOBR_RS30540 0.12 +0.2
200,842 - AZOBR_RS30540 0.12 -0.3
200,860 + AZOBR_RS30540 0.14 -0.5
200,860 + AZOBR_RS30540 0.14 -0.3
200,860 + AZOBR_RS30540 0.14 +0.6
200,861 - AZOBR_RS30540 0.15 -0.7
200,861 - AZOBR_RS30540 0.15 +0.6
201,031 + AZOBR_RS30540 0.39 -2.7
201,032 - AZOBR_RS30540 0.39 +0.8
201,032 - AZOBR_RS30540 0.39 +1.3

Or see this region's nucleotide sequence