Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30095

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30085 and AZOBR_RS30090 are separated by 75 nucleotidesAZOBR_RS30090 and AZOBR_RS30095 are separated by 129 nucleotides AZOBR_RS30085: AZOBR_RS30085 - DNA-binding protein, at 89,607 to 90,215 _RS30085 AZOBR_RS30090: AZOBR_RS30090 - hypothetical protein, at 90,291 to 90,614 _RS30090 AZOBR_RS30095: AZOBR_RS30095 - hypothetical protein, at 90,744 to 91,787 _RS30095 Position (kb) 90 91 92Strain fitness (log2 ratio) -1 0 1at 90.012 kb on + strand, within AZOBR_RS30085at 90.012 kb on + strand, within AZOBR_RS30085at 90.013 kb on - strand, within AZOBR_RS30085at 90.030 kb on + strand, within AZOBR_RS30085at 90.030 kb on + strand, within AZOBR_RS30085at 90.030 kb on + strand, within AZOBR_RS30085at 90.030 kb on + strand, within AZOBR_RS30085at 90.030 kb on + strand, within AZOBR_RS30085at 90.031 kb on - strand, within AZOBR_RS30085at 90.093 kb on + strand, within AZOBR_RS30085at 90.094 kb on - strand, within AZOBR_RS30085at 90.377 kb on - strand, within AZOBR_RS30090at 90.670 kb on + strandat 91.358 kb on - strand, within AZOBR_RS30095at 91.854 kb on - strandat 92.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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90,012 + AZOBR_RS30085 0.67 +0.0
90,012 + AZOBR_RS30085 0.67 -1.0
90,013 - AZOBR_RS30085 0.67 +1.2
90,030 + AZOBR_RS30085 0.69 -0.1
90,030 + AZOBR_RS30085 0.69 +0.7
90,030 + AZOBR_RS30085 0.69 +1.2
90,030 + AZOBR_RS30085 0.69 +0.6
90,030 + AZOBR_RS30085 0.69 +1.5
90,031 - AZOBR_RS30085 0.70 +1.3
90,093 + AZOBR_RS30085 0.80 +1.1
90,094 - AZOBR_RS30085 0.80 +0.7
90,377 - AZOBR_RS30090 0.27 +0.3
90,670 + -0.3
91,358 - AZOBR_RS30095 0.59 -0.8
91,854 - -0.1
92,182 - -0.3

Or see this region's nucleotide sequence