Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30075 and AZOBR_RS30080 are separated by 25 nucleotides AZOBR_RS30080 and AZOBR_RS30085 are separated by 309 nucleotides AZOBR_RS30085 and AZOBR_RS30090 are separated by 75 nucleotides
AZOBR_RS30075: AZOBR_RS30075 - flagellar hook protein, at 86,642 to 88,039
_RS30075
AZOBR_RS30080: AZOBR_RS30080 - flagellar hook protein, at 88,065 to 89,297
_RS30080
AZOBR_RS30085: AZOBR_RS30085 - DNA-binding protein, at 89,607 to 90,215
_RS30085
AZOBR_RS30090: AZOBR_RS30090 - hypothetical protein, at 90,291 to 90,614
_RS30090
Position (kb) 88
89
90 Strain fitness (log2 ratio) -1
0
1
2 at 87.082 kb on - strand, within AZOBR_RS30075 at 87.219 kb on + strand, within AZOBR_RS30075 at 87.220 kb on - strand, within AZOBR_RS30075 at 87.220 kb on - strand, within AZOBR_RS30075 at 87.766 kb on - strand, within AZOBR_RS30075 at 88.136 kb on - strand at 88.279 kb on + strand, within AZOBR_RS30080 at 88.279 kb on + strand, within AZOBR_RS30080 at 88.279 kb on + strand, within AZOBR_RS30080 at 88.280 kb on - strand, within AZOBR_RS30080 at 88.280 kb on - strand, within AZOBR_RS30080 at 88.280 kb on - strand, within AZOBR_RS30080 at 88.369 kb on + strand, within AZOBR_RS30080 at 88.370 kb on - strand, within AZOBR_RS30080 at 88.456 kb on + strand, within AZOBR_RS30080 at 88.457 kb on - strand, within AZOBR_RS30080 at 88.457 kb on - strand, within AZOBR_RS30080 at 88.457 kb on - strand, within AZOBR_RS30080 at 88.499 kb on - strand, within AZOBR_RS30080 at 88.718 kb on - strand, within AZOBR_RS30080 at 88.810 kb on + strand, within AZOBR_RS30080 at 88.910 kb on - strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.098 kb on + strand, within AZOBR_RS30080 at 89.099 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.132 kb on - strand, within AZOBR_RS30080 at 89.192 kb on - strand at 89.314 kb on + strand at 89.315 kb on - strand at 89.376 kb on - strand at 89.401 kb on - strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.652 kb on + strand at 89.653 kb on - strand at 89.653 kb on - strand at 89.653 kb on - strand at 90.012 kb on + strand, within AZOBR_RS30085 at 90.012 kb on + strand, within AZOBR_RS30085 at 90.013 kb on - strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.030 kb on + strand, within AZOBR_RS30085 at 90.031 kb on - strand, within AZOBR_RS30085 at 90.093 kb on + strand, within AZOBR_RS30085 at 90.094 kb on - strand, within AZOBR_RS30085
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 87,082 - AZOBR_RS30075 0.31 -0.3 87,219 + AZOBR_RS30075 0.41 -0.1 87,220 - AZOBR_RS30075 0.41 -1.7 87,220 - AZOBR_RS30075 0.41 +1.0 87,766 - AZOBR_RS30075 0.80 -0.6 88,136 - -0.1 88,279 + AZOBR_RS30080 0.17 -0.3 88,279 + AZOBR_RS30080 0.17 -0.9 88,279 + AZOBR_RS30080 0.17 +0.9 88,280 - AZOBR_RS30080 0.17 -0.4 88,280 - AZOBR_RS30080 0.17 -0.7 88,280 - AZOBR_RS30080 0.17 +0.5 88,369 + AZOBR_RS30080 0.25 +0.5 88,370 - AZOBR_RS30080 0.25 +0.1 88,456 + AZOBR_RS30080 0.32 -0.0 88,457 - AZOBR_RS30080 0.32 -0.3 88,457 - AZOBR_RS30080 0.32 -0.2 88,457 - AZOBR_RS30080 0.32 +0.3 88,499 - AZOBR_RS30080 0.35 -0.6 88,718 - AZOBR_RS30080 0.53 -0.0 88,810 + AZOBR_RS30080 0.60 -0.8 88,910 - AZOBR_RS30080 0.69 -0.3 89,098 + AZOBR_RS30080 0.84 -1.3 89,098 + AZOBR_RS30080 0.84 +2.2 89,099 - AZOBR_RS30080 0.84 -0.5 89,132 - AZOBR_RS30080 0.87 +0.0 89,132 - AZOBR_RS30080 0.87 +0.1 89,192 - -0.7 89,314 + -0.4 89,315 - -0.4 89,376 - -0.3 89,401 - -0.1 89,652 + +1.1 89,652 + +0.5 89,652 + +0.3 89,653 - -0.4 89,653 - +1.0 89,653 - -0.9 90,012 + AZOBR_RS30085 0.67 +0.0 90,012 + AZOBR_RS30085 0.67 -1.0 90,013 - AZOBR_RS30085 0.67 +1.2 90,030 + AZOBR_RS30085 0.69 -0.1 90,030 + AZOBR_RS30085 0.69 +0.7 90,030 + AZOBR_RS30085 0.69 +1.2 90,030 + AZOBR_RS30085 0.69 +0.6 90,030 + AZOBR_RS30085 0.69 +1.5 90,031 - AZOBR_RS30085 0.70 +1.3 90,093 + AZOBR_RS30085 0.80 +1.1 90,094 - AZOBR_RS30085 0.80 +0.7
Or see this region's nucleotide sequence