Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28170 and AZOBR_RS28175 are separated by 126 nucleotides AZOBR_RS28175 and AZOBR_RS28180 are separated by 26 nucleotides AZOBR_RS28180 and AZOBR_RS28185 are separated by 28 nucleotides
AZOBR_RS28170: AZOBR_RS28170 - TetR family transcriptional regulator, at 490,780 to 491,376
_RS28170
AZOBR_RS28175: AZOBR_RS28175 - short-chain dehydrogenase, at 491,503 to 492,258
_RS28175
AZOBR_RS28180: AZOBR_RS28180 - acetyl-CoA acetyltransferase, at 492,285 to 493,478
_RS28180
AZOBR_RS28185: AZOBR_RS28185 - MFS transporter, at 493,507 to 494,793
_RS28185
Position (kb) 492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 491.512 kb on - strand at 491.966 kb on - strand, within AZOBR_RS28175 at 491.966 kb on - strand, within AZOBR_RS28175 at 492.273 kb on + strand at 492.274 kb on - strand at 492.663 kb on + strand, within AZOBR_RS28180 at 492.750 kb on + strand, within AZOBR_RS28180 at 492.750 kb on + strand, within AZOBR_RS28180 at 492.832 kb on - strand, within AZOBR_RS28180 at 492.832 kb on - strand, within AZOBR_RS28180 at 494.410 kb on + strand, within AZOBR_RS28185 at 494.411 kb on - strand, within AZOBR_RS28185 at 494.437 kb on + strand at 494.441 kb on - strand, within AZOBR_RS28185
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 491,512 - +2.0 491,966 - AZOBR_RS28175 0.61 +0.6 491,966 - AZOBR_RS28175 0.61 -0.2 492,273 + +1.2 492,274 - +0.2 492,663 + AZOBR_RS28180 0.32 -1.9 492,750 + AZOBR_RS28180 0.39 -1.4 492,750 + AZOBR_RS28180 0.39 -0.2 492,832 - AZOBR_RS28180 0.46 +0.1 492,832 - AZOBR_RS28180 0.46 -1.0 494,410 + AZOBR_RS28185 0.70 +0.5 494,411 - AZOBR_RS28185 0.70 -0.4 494,437 + +0.6 494,441 - AZOBR_RS28185 0.73 +0.1
Or see this region's nucleotide sequence