Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28165

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28160 and AZOBR_RS28165 are separated by 151 nucleotidesAZOBR_RS28165 and AZOBR_RS28170 are separated by 36 nucleotidesAZOBR_RS28170 and AZOBR_RS28175 are separated by 126 nucleotides AZOBR_RS28160: AZOBR_RS28160 - hypothetical protein, at 489,780 to 490,349 _RS28160 AZOBR_RS28165: AZOBR_RS28165 - hypothetical protein, at 490,501 to 490,743 _RS28165 AZOBR_RS28170: AZOBR_RS28170 - TetR family transcriptional regulator, at 490,780 to 491,376 _RS28170 AZOBR_RS28175: AZOBR_RS28175 - short-chain dehydrogenase, at 491,503 to 492,258 _RS28175 Position (kb) 490 491Strain fitness (log2 ratio) -2 -1 0 1 2at 489.790 kb on + strandat 489.790 kb on + strandat 489.790 kb on + strandat 489.791 kb on - strandat 489.856 kb on + strand, within AZOBR_RS28160at 489.856 kb on + strand, within AZOBR_RS28160at 489.979 kb on + strand, within AZOBR_RS28160at 489.980 kb on - strand, within AZOBR_RS28160at 489.980 kb on - strand, within AZOBR_RS28160at 490.012 kb on + strand, within AZOBR_RS28160at 490.012 kb on + strand, within AZOBR_RS28160at 491.235 kb on - strand, within AZOBR_RS28170at 491.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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489,790 + -1.1
489,790 + +0.2
489,790 + -0.1
489,791 - -0.9
489,856 + AZOBR_RS28160 0.13 -0.7
489,856 + AZOBR_RS28160 0.13 +0.4
489,979 + AZOBR_RS28160 0.35 -0.9
489,980 - AZOBR_RS28160 0.35 -1.4
489,980 - AZOBR_RS28160 0.35 -1.7
490,012 + AZOBR_RS28160 0.41 +0.0
490,012 + AZOBR_RS28160 0.41 +0.5
491,235 - AZOBR_RS28170 0.76 -1.8
491,512 - +2.0

Or see this region's nucleotide sequence