Experiment: Chlorite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20620 and AZOBR_RS20625 are separated by 7 nucleotides AZOBR_RS20625 and AZOBR_RS20630 are separated by 189 nucleotides AZOBR_RS20630 and AZOBR_RS20635 are separated by 37 nucleotides
AZOBR_RS20620: AZOBR_RS20620 - hypothetical protein, at 1,387,106 to 1,388,035
_RS20620
AZOBR_RS20625: AZOBR_RS20625 - Holliday junction resolvase, at 1,388,043 to 1,388,618
_RS20625
AZOBR_RS20630: AZOBR_RS20630 - acetyltransferase, at 1,388,808 to 1,389,293
_RS20630
AZOBR_RS20635: AZOBR_RS20635 - putative methyl-accepting chemotaxis protein, at 1,389,331 to 1,391,007
_RS20635
Position (kb) 1388
1389
1390 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1387.917 kb on + strand, within AZOBR_RS20620 at 1387.917 kb on + strand, within AZOBR_RS20620 at 1387.917 kb on + strand, within AZOBR_RS20620 at 1388.104 kb on + strand, within AZOBR_RS20625 at 1388.104 kb on + strand, within AZOBR_RS20625 at 1388.631 kb on - strand at 1388.721 kb on + strand at 1388.865 kb on + strand, within AZOBR_RS20630 at 1388.865 kb on + strand, within AZOBR_RS20630 at 1388.866 kb on - strand, within AZOBR_RS20630 at 1389.169 kb on - strand, within AZOBR_RS20630 at 1389.169 kb on - strand, within AZOBR_RS20630
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 1 mM remove 1,387,917 + AZOBR_RS20620 0.87 -0.9 1,387,917 + AZOBR_RS20620 0.87 +0.3 1,387,917 + AZOBR_RS20620 0.87 -2.7 1,388,104 + AZOBR_RS20625 0.11 +1.5 1,388,104 + AZOBR_RS20625 0.11 -1.7 1,388,631 - +0.3 1,388,721 + -0.8 1,388,865 + AZOBR_RS20630 0.12 -0.9 1,388,865 + AZOBR_RS20630 0.12 -0.3 1,388,866 - AZOBR_RS20630 0.12 +0.0 1,389,169 - AZOBR_RS20630 0.74 -3.1 1,389,169 - AZOBR_RS20630 0.74 +0.7
Or see this region's nucleotide sequence