Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12975

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12970 and AZOBR_RS12975 are separated by 263 nucleotidesAZOBR_RS12975 and AZOBR_RS12980 are separated by 63 nucleotidesAZOBR_RS12980 and AZOBR_RS12985 are separated by 209 nucleotides AZOBR_RS12970: AZOBR_RS12970 - aspartate aminotransferase, at 2,734,526 to 2,735,731 _RS12970 AZOBR_RS12975: AZOBR_RS12975 - cytochrome C, at 2,735,995 to 2,736,423 _RS12975 AZOBR_RS12980: AZOBR_RS12980 - cytochrome B, at 2,736,487 to 2,737,194 _RS12980 AZOBR_RS12985: AZOBR_RS12985 - inositol monophosphatase, at 2,737,404 to 2,737,643 _RS12985 Position (kb) 2735 2736 2737Strain fitness (log2 ratio) -1 0 1 2at 2735.785 kb on - strandat 2735.785 kb on - strandat 2735.957 kb on - strandat 2736.299 kb on - strand, within AZOBR_RS12975at 2736.299 kb on - strand, within AZOBR_RS12975at 2736.299 kb on - strand, within AZOBR_RS12975at 2736.653 kb on + strand, within AZOBR_RS12980at 2737.182 kb on + strandat 2737.182 kb on + strandat 2737.226 kb on - strandat 2737.230 kb on + strandat 2737.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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2,735,785 - -0.2
2,735,785 - +1.9
2,735,957 - -0.5
2,736,299 - AZOBR_RS12975 0.71 +0.1
2,736,299 - AZOBR_RS12975 0.71 +0.1
2,736,299 - AZOBR_RS12975 0.71 +0.5
2,736,653 + AZOBR_RS12980 0.23 +0.9
2,737,182 + +0.3
2,737,182 + +0.4
2,737,226 - +0.9
2,737,230 + -0.6
2,737,342 + +0.4

Or see this region's nucleotide sequence