Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00560

Experiment: Chlorite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00550 and AZOBR_RS00555 are separated by 1 nucleotidesAZOBR_RS00555 and AZOBR_RS00560 are separated by 186 nucleotidesAZOBR_RS00560 and AZOBR_RS00565 are separated by 244 nucleotides AZOBR_RS00550: AZOBR_RS00550 - histidine kinase, at 109,967 to 111,346 _RS00550 AZOBR_RS00555: AZOBR_RS00555 - chemotaxis protein CheY, at 111,348 to 112,073 _RS00555 AZOBR_RS00560: AZOBR_RS00560 - hypothetical protein, at 112,260 to 112,814 _RS00560 AZOBR_RS00565: AZOBR_RS00565 - ferredoxin--NADP reductase, at 113,059 to 114,081 _RS00565 Position (kb) 112 113Strain fitness (log2 ratio) -1 0 1at 111.293 kb on - strandat 111.572 kb on - strand, within AZOBR_RS00555at 111.763 kb on + strand, within AZOBR_RS00555at 111.763 kb on + strand, within AZOBR_RS00555at 112.194 kb on - strandat 112.271 kb on + strandat 112.545 kb on + strand, within AZOBR_RS00560at 112.545 kb on + strand, within AZOBR_RS00560at 112.546 kb on - strand, within AZOBR_RS00560at 113.061 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 1 mM
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111,293 - -0.2
111,572 - AZOBR_RS00555 0.31 -0.5
111,763 + AZOBR_RS00555 0.57 -0.3
111,763 + AZOBR_RS00555 0.57 +1.5
112,194 - +1.1
112,271 + -0.4
112,545 + AZOBR_RS00560 0.51 +0.9
112,545 + AZOBR_RS00560 0.51 +0.7
112,546 - AZOBR_RS00560 0.52 +0.5
113,061 - +0.0

Or see this region's nucleotide sequence