Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22450

Experiment: Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22440 and AO356_22445 are separated by 47 nucleotidesAO356_22445 and AO356_22450 are separated by 62 nucleotidesAO356_22450 and AO356_22455 are separated by 439 nucleotides AO356_22440: AO356_22440 - LysR family transcriptional regulator, at 5,015,308 to 5,016,240 _22440 AO356_22445: AO356_22445 - cupin, at 5,016,288 to 5,016,632 _22445 AO356_22450: AO356_22450 - hypothetical protein, at 5,016,695 to 5,017,051 _22450 AO356_22455: AO356_22455 - oxidoreductase, at 5,017,491 to 5,018,258 _22455 Position (kb) 5016 5017 5018Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5015.769 kb on + strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.770 kb on - strand, within AO356_22440at 5015.780 kb on - strand, within AO356_22440at 5015.894 kb on + strand, within AO356_22440at 5015.894 kb on + strand, within AO356_22440at 5015.894 kb on + strand, within AO356_22440at 5015.895 kb on - strand, within AO356_22440at 5015.895 kb on - strand, within AO356_22440at 5015.895 kb on - strand, within AO356_22440at 5015.902 kb on - strand, within AO356_22440at 5015.976 kb on + strand, within AO356_22440at 5016.085 kb on + strand, within AO356_22440at 5016.085 kb on + strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440at 5016.086 kb on - strand, within AO356_22440at 5016.248 kb on - strandat 5016.257 kb on + strandat 5016.267 kb on - strandat 5016.267 kb on - strandat 5016.267 kb on - strandat 5016.267 kb on - strandat 5016.267 kb on - strandat 5016.271 kb on - strandat 5016.271 kb on - strandat 5016.374 kb on + strand, within AO356_22445at 5016.374 kb on + strand, within AO356_22445at 5016.374 kb on + strand, within AO356_22445at 5016.451 kb on + strand, within AO356_22445at 5016.451 kb on + strand, within AO356_22445at 5016.451 kb on + strand, within AO356_22445at 5016.451 kb on + strand, within AO356_22445at 5016.452 kb on - strand, within AO356_22445at 5016.471 kb on + strand, within AO356_22445at 5016.471 kb on + strand, within AO356_22445at 5016.471 kb on + strand, within AO356_22445at 5016.471 kb on + strand, within AO356_22445at 5016.471 kb on + strand, within AO356_22445at 5016.472 kb on - strand, within AO356_22445at 5016.472 kb on - strand, within AO356_22445at 5016.557 kb on + strand, within AO356_22445at 5016.557 kb on + strand, within AO356_22445at 5016.630 kb on + strandat 5016.630 kb on + strandat 5016.630 kb on + strandat 5016.630 kb on + strandat 5016.696 kb on + strandat 5016.843 kb on + strand, within AO356_22450at 5016.912 kb on + strand, within AO356_22450at 5016.912 kb on + strand, within AO356_22450at 5016.932 kb on - strand, within AO356_22450at 5016.932 kb on - strand, within AO356_22450at 5016.932 kb on - strand, within AO356_22450at 5016.932 kb on - strand, within AO356_22450at 5017.011 kb on + strand, within AO356_22450at 5017.011 kb on + strand, within AO356_22450at 5017.011 kb on + strand, within AO356_22450at 5017.012 kb on - strand, within AO356_22450at 5017.023 kb on + strandat 5017.023 kb on + strandat 5017.070 kb on + strandat 5017.071 kb on - strandat 5017.071 kb on - strandat 5017.124 kb on + strandat 5017.125 kb on - strandat 5017.130 kb on + strandat 5017.130 kb on + strandat 5017.130 kb on + strandat 5017.131 kb on - strandat 5017.131 kb on - strandat 5017.131 kb on - strandat 5017.131 kb on - strandat 5017.184 kb on + strandat 5017.184 kb on + strandat 5017.184 kb on + strandat 5017.184 kb on + strandat 5017.185 kb on - strandat 5017.185 kb on - strandat 5017.305 kb on + strandat 5017.305 kb on + strandat 5017.305 kb on + strandat 5017.305 kb on + strandat 5017.306 kb on - strandat 5017.306 kb on - strandat 5017.306 kb on - strandat 5017.306 kb on - strandat 5017.353 kb on + strandat 5017.353 kb on + strandat 5017.437 kb on - strandat 5017.474 kb on + strandat 5017.475 kb on - strandat 5017.475 kb on - strandat 5017.475 kb on - strandat 5017.519 kb on + strandat 5017.520 kb on - strandat 5017.523 kb on + strandat 5017.588 kb on + strand, within AO356_22455at 5017.588 kb on + strand, within AO356_22455at 5017.588 kb on + strand, within AO356_22455at 5017.588 kb on + strand, within AO356_22455at 5017.588 kb on + strand, within AO356_22455at 5017.588 kb on + strand, within AO356_22455at 5017.588 kb on + strand, within AO356_22455at 5017.589 kb on - strand, within AO356_22455at 5017.607 kb on + strand, within AO356_22455at 5017.608 kb on - strand, within AO356_22455at 5017.686 kb on - strand, within AO356_22455at 5017.686 kb on - strand, within AO356_22455at 5017.880 kb on + strand, within AO356_22455at 5017.881 kb on - strand, within AO356_22455at 5018.019 kb on + strand, within AO356_22455

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.025 mM
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5,015,769 + AO356_22440 0.49 +1.4
5,015,770 - AO356_22440 0.50 +1.1
5,015,770 - AO356_22440 0.50 +1.0
5,015,770 - AO356_22440 0.50 +0.8
5,015,770 - AO356_22440 0.50 +0.1
5,015,780 - AO356_22440 0.51 +0.1
5,015,894 + AO356_22440 0.63 +0.0
5,015,894 + AO356_22440 0.63 +0.1
5,015,894 + AO356_22440 0.63 +0.5
5,015,895 - AO356_22440 0.63 +0.1
5,015,895 - AO356_22440 0.63 +0.8
5,015,895 - AO356_22440 0.63 +1.1
5,015,902 - AO356_22440 0.64 +0.7
5,015,976 + AO356_22440 0.72 -0.5
5,016,085 + AO356_22440 0.83 +0.1
5,016,085 + AO356_22440 0.83 +0.6
5,016,086 - AO356_22440 0.83 +1.0
5,016,086 - AO356_22440 0.83 +2.8
5,016,086 - AO356_22440 0.83 +0.5
5,016,086 - AO356_22440 0.83 -0.1
5,016,248 - +0.9
5,016,257 + -0.7
5,016,267 - -0.1
5,016,267 - +0.7
5,016,267 - +0.9
5,016,267 - +0.0
5,016,267 - +0.6
5,016,271 - +0.4
5,016,271 - +0.4
5,016,374 + AO356_22445 0.25 -0.4
5,016,374 + AO356_22445 0.25 +0.7
5,016,374 + AO356_22445 0.25 +0.8
5,016,451 + AO356_22445 0.47 +1.2
5,016,451 + AO356_22445 0.47 +0.3
5,016,451 + AO356_22445 0.47 +1.2
5,016,451 + AO356_22445 0.47 -0.1
5,016,452 - AO356_22445 0.48 -0.7
5,016,471 + AO356_22445 0.53 -0.0
5,016,471 + AO356_22445 0.53 -0.8
5,016,471 + AO356_22445 0.53 +0.8
5,016,471 + AO356_22445 0.53 +1.1
5,016,471 + AO356_22445 0.53 +1.1
5,016,472 - AO356_22445 0.53 +0.4
5,016,472 - AO356_22445 0.53 +0.3
5,016,557 + AO356_22445 0.78 +0.1
5,016,557 + AO356_22445 0.78 -0.0
5,016,630 + +0.3
5,016,630 + +1.1
5,016,630 + -0.1
5,016,630 + -2.6
5,016,696 + +1.2
5,016,843 + AO356_22450 0.41 +0.2
5,016,912 + AO356_22450 0.61 -0.8
5,016,912 + AO356_22450 0.61 +0.0
5,016,932 - AO356_22450 0.66 +0.9
5,016,932 - AO356_22450 0.66 +0.3
5,016,932 - AO356_22450 0.66 -0.9
5,016,932 - AO356_22450 0.66 -0.3
5,017,011 + AO356_22450 0.89 +0.1
5,017,011 + AO356_22450 0.89 +0.4
5,017,011 + AO356_22450 0.89 +0.7
5,017,012 - AO356_22450 0.89 -0.4
5,017,023 + -1.7
5,017,023 + -0.5
5,017,070 + +0.9
5,017,071 - -0.6
5,017,071 - +0.4
5,017,124 + +0.7
5,017,125 - +0.5
5,017,130 + -0.6
5,017,130 + -0.2
5,017,130 + +0.9
5,017,131 - +0.1
5,017,131 - -1.7
5,017,131 - +0.3
5,017,131 - -0.2
5,017,184 + -0.1
5,017,184 + +0.8
5,017,184 + +0.3
5,017,184 + +0.2
5,017,185 - -0.2
5,017,185 - -0.5
5,017,305 + -0.3
5,017,305 + +0.4
5,017,305 + +0.2
5,017,305 + -0.2
5,017,306 - -0.2
5,017,306 - -0.4
5,017,306 - +0.3
5,017,306 - +1.2
5,017,353 + -0.1
5,017,353 + -0.3
5,017,437 - -0.5
5,017,474 + +0.1
5,017,475 - -0.1
5,017,475 - +0.8
5,017,475 - -0.2
5,017,519 + +0.2
5,017,520 - +2.3
5,017,523 + +1.8
5,017,588 + AO356_22455 0.13 -0.4
5,017,588 + AO356_22455 0.13 +0.3
5,017,588 + AO356_22455 0.13 +0.9
5,017,588 + AO356_22455 0.13 +0.6
5,017,588 + AO356_22455 0.13 -0.0
5,017,588 + AO356_22455 0.13 +0.9
5,017,588 + AO356_22455 0.13 +0.4
5,017,589 - AO356_22455 0.13 -0.6
5,017,607 + AO356_22455 0.15 +0.9
5,017,608 - AO356_22455 0.15 +1.0
5,017,686 - AO356_22455 0.25 +0.6
5,017,686 - AO356_22455 0.25 +0.1
5,017,880 + AO356_22455 0.51 +0.6
5,017,881 - AO356_22455 0.51 +0.4
5,018,019 + AO356_22455 0.69 -0.2

Or see this region's nucleotide sequence