Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21495

Experiment: Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21475 and AO356_21480 are separated by 103 nucleotidesAO356_21480 and AO356_21485 are separated by 58 nucleotidesAO356_21485 and AO356_21490 are separated by 89 nucleotidesAO356_21490 and AO356_21495 are separated by 189 nucleotidesAO356_21495 and AO356_21500 are separated by 184 nucleotidesAO356_21500 and AO356_21505 are separated by 82 nucleotides AO356_21475: AO356_21475 - oxidoreductase, at 4,815,738 to 4,816,511 _21475 AO356_21480: AO356_21480 - tRNA-Val, at 4,816,615 to 4,816,690 _21480 AO356_21485: AO356_21485 - tRNA-Asp, at 4,816,749 to 4,816,825 _21485 AO356_21490: AO356_21490 - tRNA-Asp, at 4,816,915 to 4,816,991 _21490 AO356_21495: AO356_21495 - gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data), at 4,817,181 to 4,818,464 _21495 AO356_21500: AO356_21500 - tRNA-Val, at 4,818,649 to 4,818,725 _21500 AO356_21505: AO356_21505 - hypothetical protein, at 4,818,808 to 4,819,452 _21505 Position (kb) 4817 4818 4819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4816.215 kb on + strand, within AO356_21475at 4816.216 kb on - strand, within AO356_21475at 4816.216 kb on - strand, within AO356_21475at 4816.399 kb on + strand, within AO356_21475at 4816.503 kb on + strandat 4816.503 kb on + strandat 4816.572 kb on - strandat 4816.826 kb on + strandat 4817.026 kb on + strandat 4817.026 kb on + strandat 4817.026 kb on + strandat 4817.026 kb on + strandat 4817.046 kb on + strandat 4817.110 kb on + strandat 4817.195 kb on + strandat 4817.212 kb on + strandat 4817.353 kb on + strand, within AO356_21495at 4817.353 kb on + strand, within AO356_21495at 4817.353 kb on + strand, within AO356_21495at 4817.354 kb on - strand, within AO356_21495at 4817.354 kb on - strand, within AO356_21495at 4817.354 kb on - strand, within AO356_21495at 4817.386 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.389 kb on + strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.390 kb on - strand, within AO356_21495at 4817.397 kb on - strand, within AO356_21495at 4817.461 kb on + strand, within AO356_21495at 4817.461 kb on + strand, within AO356_21495at 4817.551 kb on + strand, within AO356_21495at 4817.551 kb on + strand, within AO356_21495at 4817.551 kb on + strand, within AO356_21495at 4817.552 kb on - strand, within AO356_21495at 4817.552 kb on - strand, within AO356_21495at 4817.603 kb on - strand, within AO356_21495at 4817.603 kb on - strand, within AO356_21495at 4817.614 kb on + strand, within AO356_21495at 4817.614 kb on + strand, within AO356_21495at 4817.614 kb on + strand, within AO356_21495at 4817.615 kb on - strand, within AO356_21495at 4817.615 kb on - strand, within AO356_21495at 4817.635 kb on + strand, within AO356_21495at 4817.635 kb on + strand, within AO356_21495at 4817.749 kb on + strand, within AO356_21495at 4817.750 kb on - strand, within AO356_21495at 4817.855 kb on - strand, within AO356_21495at 4817.855 kb on - strand, within AO356_21495at 4817.855 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.919 kb on - strand, within AO356_21495at 4817.942 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.953 kb on + strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.954 kb on - strand, within AO356_21495at 4817.982 kb on - strand, within AO356_21495at 4818.065 kb on + strand, within AO356_21495at 4818.066 kb on - strand, within AO356_21495at 4818.085 kb on - strand, within AO356_21495at 4818.085 kb on - strand, within AO356_21495at 4818.119 kb on - strand, within AO356_21495at 4818.164 kb on + strand, within AO356_21495at 4818.165 kb on - strand, within AO356_21495at 4818.210 kb on + strand, within AO356_21495at 4818.210 kb on + strand, within AO356_21495at 4818.211 kb on - strand, within AO356_21495at 4818.227 kb on + strand, within AO356_21495at 4818.229 kb on + strand, within AO356_21495at 4818.229 kb on + strand, within AO356_21495at 4818.229 kb on + strand, within AO356_21495at 4818.230 kb on - strand, within AO356_21495at 4818.230 kb on - strand, within AO356_21495at 4818.349 kb on + strandat 4818.349 kb on + strandat 4818.350 kb on - strandat 4818.350 kb on - strandat 4818.434 kb on - strandat 4818.434 kb on - strandat 4818.434 kb on - strandat 4818.436 kb on + strandat 4818.436 kb on + strandat 4818.436 kb on + strandat 4818.436 kb on + strandat 4818.437 kb on - strandat 4818.437 kb on - strandat 4818.448 kb on + strandat 4818.449 kb on - strandat 4818.516 kb on + strandat 4818.517 kb on - strandat 4818.517 kb on - strandat 4818.591 kb on + strandat 4818.656 kb on + strandat 4818.656 kb on + strandat 4818.752 kb on + strandat 4818.752 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.795 kb on + strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.796 kb on - strandat 4818.827 kb on + strandat 4818.840 kb on + strandat 4818.840 kb on + strandat 4818.840 kb on + strandat 4818.840 kb on + strandat 4818.841 kb on - strandat 4818.841 kb on - strandat 4818.842 kb on + strandat 4818.843 kb on - strandat 4818.866 kb on + strandat 4818.866 kb on + strandat 4818.867 kb on - strandat 4818.867 kb on - strandat 4818.881 kb on - strand, within AO356_21505at 4818.892 kb on - strand, within AO356_21505at 4818.892 kb on - strand, within AO356_21505at 4818.943 kb on + strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.944 kb on - strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.951 kb on + strand, within AO356_21505at 4818.952 kb on - strand, within AO356_21505at 4818.952 kb on - strand, within AO356_21505at 4818.987 kb on + strand, within AO356_21505at 4818.987 kb on + strand, within AO356_21505at 4818.987 kb on + strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4818.988 kb on - strand, within AO356_21505at 4819.024 kb on - strand, within AO356_21505at 4819.102 kb on - strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.141 kb on + strand, within AO356_21505at 4819.142 kb on - strand, within AO356_21505at 4819.142 kb on - strand, within AO356_21505at 4819.142 kb on - strand, within AO356_21505at 4819.162 kb on + strand, within AO356_21505at 4819.234 kb on + strand, within AO356_21505at 4819.288 kb on + strand, within AO356_21505at 4819.344 kb on + strand, within AO356_21505at 4819.344 kb on + strand, within AO356_21505at 4819.345 kb on - strand, within AO356_21505at 4819.345 kb on - strand, within AO356_21505at 4819.345 kb on - strand, within AO356_21505at 4819.372 kb on - strand, within AO356_21505at 4819.387 kb on - strand, within AO356_21505at 4819.387 kb on - strand, within AO356_21505at 4819.444 kb on - strandat 4819.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.025 mM
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4,816,215 + AO356_21475 0.62 +0.8
4,816,216 - AO356_21475 0.62 +0.4
4,816,216 - AO356_21475 0.62 -0.3
4,816,399 + AO356_21475 0.85 +0.4
4,816,503 + +0.9
4,816,503 + +0.3
4,816,572 - -2.4
4,816,826 + +0.5
4,817,026 + -0.2
4,817,026 + -0.4
4,817,026 + -0.4
4,817,026 + +0.5
4,817,046 + -0.8
4,817,110 + +0.2
4,817,195 + -0.9
4,817,212 + +0.1
4,817,353 + AO356_21495 0.13 -0.5
4,817,353 + AO356_21495 0.13 +0.3
4,817,353 + AO356_21495 0.13 +0.3
4,817,354 - AO356_21495 0.13 +0.6
4,817,354 - AO356_21495 0.13 -1.2
4,817,354 - AO356_21495 0.13 +0.4
4,817,386 + AO356_21495 0.16 +0.0
4,817,389 + AO356_21495 0.16 +0.3
4,817,389 + AO356_21495 0.16 -0.3
4,817,389 + AO356_21495 0.16 +0.2
4,817,389 + AO356_21495 0.16 -0.4
4,817,390 - AO356_21495 0.16 +0.0
4,817,390 - AO356_21495 0.16 +1.6
4,817,390 - AO356_21495 0.16 -0.5
4,817,390 - AO356_21495 0.16 -0.3
4,817,390 - AO356_21495 0.16 +0.4
4,817,390 - AO356_21495 0.16 -1.1
4,817,397 - AO356_21495 0.17 -0.3
4,817,461 + AO356_21495 0.22 -0.0
4,817,461 + AO356_21495 0.22 -0.9
4,817,551 + AO356_21495 0.29 +0.9
4,817,551 + AO356_21495 0.29 -1.1
4,817,551 + AO356_21495 0.29 +0.1
4,817,552 - AO356_21495 0.29 +0.6
4,817,552 - AO356_21495 0.29 -0.2
4,817,603 - AO356_21495 0.33 -1.1
4,817,603 - AO356_21495 0.33 +1.3
4,817,614 + AO356_21495 0.34 +1.0
4,817,614 + AO356_21495 0.34 +0.8
4,817,614 + AO356_21495 0.34 +0.0
4,817,615 - AO356_21495 0.34 +0.7
4,817,615 - AO356_21495 0.34 +0.0
4,817,635 + AO356_21495 0.35 +0.4
4,817,635 + AO356_21495 0.35 -1.1
4,817,749 + AO356_21495 0.44 -1.2
4,817,750 - AO356_21495 0.44 +0.3
4,817,855 - AO356_21495 0.52 +0.1
4,817,855 - AO356_21495 0.52 +0.8
4,817,855 - AO356_21495 0.52 -0.1
4,817,919 - AO356_21495 0.57 +0.6
4,817,919 - AO356_21495 0.57 -0.9
4,817,919 - AO356_21495 0.57 -0.0
4,817,919 - AO356_21495 0.57 -0.3
4,817,942 + AO356_21495 0.59 -0.3
4,817,953 + AO356_21495 0.60 -0.5
4,817,953 + AO356_21495 0.60 -0.5
4,817,953 + AO356_21495 0.60 -1.1
4,817,953 + AO356_21495 0.60 -0.1
4,817,953 + AO356_21495 0.60 -0.6
4,817,953 + AO356_21495 0.60 +0.9
4,817,953 + AO356_21495 0.60 +0.9
4,817,954 - AO356_21495 0.60 -0.5
4,817,954 - AO356_21495 0.60 -0.2
4,817,954 - AO356_21495 0.60 +0.0
4,817,954 - AO356_21495 0.60 -0.2
4,817,954 - AO356_21495 0.60 -0.0
4,817,954 - AO356_21495 0.60 -0.4
4,817,954 - AO356_21495 0.60 -0.9
4,817,982 - AO356_21495 0.62 +0.3
4,818,065 + AO356_21495 0.69 -0.3
4,818,066 - AO356_21495 0.69 +0.4
4,818,085 - AO356_21495 0.70 +0.4
4,818,085 - AO356_21495 0.70 +0.2
4,818,119 - AO356_21495 0.73 -0.4
4,818,164 + AO356_21495 0.77 +0.4
4,818,165 - AO356_21495 0.77 +0.0
4,818,210 + AO356_21495 0.80 +0.3
4,818,210 + AO356_21495 0.80 +0.3
4,818,211 - AO356_21495 0.80 +0.2
4,818,227 + AO356_21495 0.81 +0.6
4,818,229 + AO356_21495 0.82 +0.2
4,818,229 + AO356_21495 0.82 +0.0
4,818,229 + AO356_21495 0.82 +0.5
4,818,230 - AO356_21495 0.82 -0.3
4,818,230 - AO356_21495 0.82 +0.4
4,818,349 + +0.0
4,818,349 + +0.7
4,818,350 - +0.1
4,818,350 - -0.5
4,818,434 - +0.6
4,818,434 - -0.1
4,818,434 - +1.4
4,818,436 + -0.1
4,818,436 + +0.6
4,818,436 + +0.3
4,818,436 + -0.5
4,818,437 - +0.4
4,818,437 - +1.4
4,818,448 + +0.5
4,818,449 - +0.5
4,818,516 + -0.4
4,818,517 - +0.2
4,818,517 - +0.3
4,818,591 + -2.0
4,818,656 + +0.5
4,818,656 + +0.2
4,818,752 + +0.9
4,818,752 + +0.3
4,818,795 + +0.3
4,818,795 + -1.5
4,818,795 + -0.7
4,818,795 + +0.4
4,818,795 + -0.3
4,818,795 + +0.7
4,818,795 + -0.4
4,818,795 + -0.8
4,818,796 - -0.2
4,818,796 - +1.6
4,818,796 - -0.0
4,818,796 - -0.0
4,818,796 - -0.3
4,818,796 - -0.6
4,818,827 + +0.2
4,818,840 + -1.7
4,818,840 + +0.4
4,818,840 + +0.4
4,818,840 + +0.5
4,818,841 - +0.1
4,818,841 - +0.0
4,818,842 + +0.0
4,818,843 - +0.4
4,818,866 + +0.9
4,818,866 + +0.2
4,818,867 - +0.2
4,818,867 - +1.0
4,818,881 - AO356_21505 0.11 -0.8
4,818,892 - AO356_21505 0.13 +0.8
4,818,892 - AO356_21505 0.13 +0.4
4,818,943 + AO356_21505 0.21 -0.1
4,818,944 - AO356_21505 0.21 -0.5
4,818,944 - AO356_21505 0.21 -0.2
4,818,944 - AO356_21505 0.21 -3.1
4,818,944 - AO356_21505 0.21 +0.2
4,818,951 + AO356_21505 0.22 -0.6
4,818,951 + AO356_21505 0.22 -1.1
4,818,951 + AO356_21505 0.22 +0.2
4,818,951 + AO356_21505 0.22 -1.8
4,818,951 + AO356_21505 0.22 +2.0
4,818,952 - AO356_21505 0.22 +0.7
4,818,952 - AO356_21505 0.22 -1.6
4,818,987 + AO356_21505 0.28 +0.1
4,818,987 + AO356_21505 0.28 +0.3
4,818,987 + AO356_21505 0.28 +0.3
4,818,988 - AO356_21505 0.28 +0.7
4,818,988 - AO356_21505 0.28 +1.0
4,818,988 - AO356_21505 0.28 +0.2
4,818,988 - AO356_21505 0.28 -1.2
4,818,988 - AO356_21505 0.28 -0.1
4,819,024 - AO356_21505 0.33 -1.9
4,819,102 - AO356_21505 0.46 +0.1
4,819,141 + AO356_21505 0.52 +0.7
4,819,141 + AO356_21505 0.52 +0.3
4,819,141 + AO356_21505 0.52 +2.3
4,819,141 + AO356_21505 0.52 -1.1
4,819,142 - AO356_21505 0.52 +0.1
4,819,142 - AO356_21505 0.52 +0.4
4,819,142 - AO356_21505 0.52 -1.7
4,819,162 + AO356_21505 0.55 +0.3
4,819,234 + AO356_21505 0.66 +0.3
4,819,288 + AO356_21505 0.74 +0.3
4,819,344 + AO356_21505 0.83 -0.3
4,819,344 + AO356_21505 0.83 +0.1
4,819,345 - AO356_21505 0.83 -1.5
4,819,345 - AO356_21505 0.83 +0.8
4,819,345 - AO356_21505 0.83 +0.3
4,819,372 - AO356_21505 0.87 +0.1
4,819,387 - AO356_21505 0.90 +1.5
4,819,387 - AO356_21505 0.90 +0.4
4,819,444 - +1.2
4,819,444 - -0.2

Or see this region's nucleotide sequence