Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_3072 and DvMF_3073 are separated by 321 nucleotides DvMF_3073 and DvMF_3074 are separated by 341 nucleotides
DvMF_3072: DvMF_3072 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,877,657 to 3,879,486
_3072
DvMF_3073: DvMF_3073 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,879,808 to 3,881,841
_3073
DvMF_3074: DvMF_3074 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 3,882,183 to 3,883,274
_3074
Position (kb)
3879
3880
3881
3882 Strain fitness (log2 ratio)
-2
-1
0
1 at 3878.971 kb on - strand, within DvMF_3072 at 3879.115 kb on - strand, within DvMF_3072 at 3879.222 kb on + strand, within DvMF_3072 at 3879.361 kb on - strand at 3879.531 kb on + strand at 3879.538 kb on + strand at 3879.617 kb on + strand at 3879.889 kb on + strand at 3879.897 kb on - strand at 3879.897 kb on - strand at 3879.937 kb on + strand at 3880.135 kb on + strand, within DvMF_3073 at 3880.355 kb on + strand, within DvMF_3073 at 3880.381 kb on - strand, within DvMF_3073 at 3880.461 kb on - strand, within DvMF_3073 at 3880.471 kb on + strand, within DvMF_3073 at 3880.471 kb on - strand, within DvMF_3073 at 3880.572 kb on + strand, within DvMF_3073 at 3880.635 kb on - strand, within DvMF_3073 at 3880.778 kb on + strand, within DvMF_3073 at 3881.272 kb on + strand, within DvMF_3073 at 3881.280 kb on - strand, within DvMF_3073 at 3881.298 kb on + strand, within DvMF_3073 at 3881.393 kb on - strand, within DvMF_3073 at 3881.393 kb on - strand, within DvMF_3073 at 3881.477 kb on + strand, within DvMF_3073 at 3881.516 kb on + strand, within DvMF_3073 at 3881.987 kb on + strand at 3882.059 kb on + strand at 3882.061 kb on - strand at 3882.276 kb on + strand at 3882.346 kb on - strand, within DvMF_3074 at 3882.538 kb on + strand, within DvMF_3074 at 3882.606 kb on + strand, within DvMF_3074 at 3882.672 kb on - strand, within DvMF_3074 at 3882.711 kb on + strand, within DvMF_3074 at 3882.729 kb on + strand, within DvMF_3074 at 3882.778 kb on + strand, within DvMF_3074 at 3882.813 kb on - strand, within DvMF_3074
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml remove 3,878,971 - DvMF_3072 0.72 +0.9 3,879,115 - DvMF_3072 0.80 +0.2 3,879,222 + DvMF_3072 0.86 +0.6 3,879,361 - -2.3 3,879,531 + +0.7 3,879,538 + +0.2 3,879,617 + -0.3 3,879,889 + -0.3 3,879,897 - -1.5 3,879,897 - -0.5 3,879,937 + -1.0 3,880,135 + DvMF_3073 0.16 -1.5 3,880,355 + DvMF_3073 0.27 -0.3 3,880,381 - DvMF_3073 0.28 -0.8 3,880,461 - DvMF_3073 0.32 +0.0 3,880,471 + DvMF_3073 0.33 -1.1 3,880,471 - DvMF_3073 0.33 -0.8 3,880,572 + DvMF_3073 0.38 +0.2 3,880,635 - DvMF_3073 0.41 -0.3 3,880,778 + DvMF_3073 0.48 -0.2 3,881,272 + DvMF_3073 0.72 -1.6 3,881,280 - DvMF_3073 0.72 -0.4 3,881,298 + DvMF_3073 0.73 -0.5 3,881,393 - DvMF_3073 0.78 -0.9 3,881,393 - DvMF_3073 0.78 -0.4 3,881,477 + DvMF_3073 0.82 -0.6 3,881,516 + DvMF_3073 0.84 -0.8 3,881,987 + -0.5 3,882,059 + -0.3 3,882,061 - +0.5 3,882,276 + -0.6 3,882,346 - DvMF_3074 0.15 -0.6 3,882,538 + DvMF_3074 0.33 -1.0 3,882,606 + DvMF_3074 0.39 -1.8 3,882,672 - DvMF_3074 0.45 -1.9 3,882,711 + DvMF_3074 0.48 -0.6 3,882,729 + DvMF_3074 0.50 -1.7 3,882,778 + DvMF_3074 0.54 -1.5 3,882,813 - DvMF_3074 0.58 -0.8
Or see this region's nucleotide sequence