Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2963

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2961 and DvMF_2962 are separated by 99 nucleotidesDvMF_2962 and DvMF_2963 are separated by 85 nucleotidesDvMF_2963 and DvMF_2964 are separated by 329 nucleotidesDvMF_2964 and DvMF_2965 are separated by 203 nucleotides DvMF_2961: DvMF_2961 - hypothetical protein (RefSeq), at 3,734,657 to 3,735,172 _2961 DvMF_2962: DvMF_2962 - stationary-phase survival protein SurE (RefSeq), at 3,735,272 to 3,736,075 _2962 DvMF_2963: DvMF_2963 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,736,161 to 3,739,916 _2963 DvMF_2964: DvMF_2964 - RNP-1 like RNA-binding protein (RefSeq), at 3,740,246 to 3,740,512 _2964 DvMF_2965: DvMF_2965 - 17 kDa surface antigen (RefSeq), at 3,740,716 to 3,741,174 _2965 Position (kb) 3736 3737 3738 3739 3740Strain fitness (log2 ratio) -2 -1 0 1at 3735.627 kb on + strand, within DvMF_2962at 3735.723 kb on + strand, within DvMF_2962at 3735.788 kb on - strand, within DvMF_2962at 3735.949 kb on - strand, within DvMF_2962at 3736.121 kb on + strandat 3736.754 kb on + strand, within DvMF_2963at 3736.783 kb on + strand, within DvMF_2963at 3737.026 kb on + strand, within DvMF_2963at 3737.058 kb on - strand, within DvMF_2963at 3737.097 kb on - strand, within DvMF_2963at 3737.216 kb on - strand, within DvMF_2963at 3737.216 kb on - strand, within DvMF_2963at 3737.723 kb on - strand, within DvMF_2963at 3737.861 kb on + strand, within DvMF_2963at 3737.927 kb on - strand, within DvMF_2963at 3737.952 kb on + strand, within DvMF_2963at 3737.952 kb on + strand, within DvMF_2963at 3738.019 kb on - strand, within DvMF_2963at 3738.097 kb on + strand, within DvMF_2963at 3738.357 kb on + strand, within DvMF_2963at 3738.392 kb on + strand, within DvMF_2963at 3738.579 kb on - strand, within DvMF_2963at 3738.579 kb on - strand, within DvMF_2963at 3738.581 kb on - strand, within DvMF_2963at 3738.729 kb on + strand, within DvMF_2963at 3739.081 kb on - strand, within DvMF_2963at 3739.086 kb on + strand, within DvMF_2963at 3739.145 kb on + strand, within DvMF_2963at 3739.454 kb on - strand, within DvMF_2963at 3739.794 kb on - strandat 3739.794 kb on - strandat 3740.114 kb on + strandat 3740.189 kb on - strandat 3740.283 kb on - strand, within DvMF_2964at 3740.378 kb on + strand, within DvMF_2964at 3740.398 kb on + strand, within DvMF_2964at 3740.482 kb on + strand, within DvMF_2964at 3740.764 kb on - strand, within DvMF_2965at 3740.846 kb on + strand, within DvMF_2965

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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3,735,627 + DvMF_2962 0.44 -0.6
3,735,723 + DvMF_2962 0.56 -1.0
3,735,788 - DvMF_2962 0.64 -0.1
3,735,949 - DvMF_2962 0.84 -0.5
3,736,121 + -2.1
3,736,754 + DvMF_2963 0.16 -0.7
3,736,783 + DvMF_2963 0.17 -0.8
3,737,026 + DvMF_2963 0.23 +0.1
3,737,058 - DvMF_2963 0.24 -0.6
3,737,097 - DvMF_2963 0.25 -0.5
3,737,216 - DvMF_2963 0.28 -0.0
3,737,216 - DvMF_2963 0.28 -0.1
3,737,723 - DvMF_2963 0.42 +0.1
3,737,861 + DvMF_2963 0.45 -1.0
3,737,927 - DvMF_2963 0.47 -0.5
3,737,952 + DvMF_2963 0.48 -0.3
3,737,952 + DvMF_2963 0.48 -0.8
3,738,019 - DvMF_2963 0.49 -0.0
3,738,097 + DvMF_2963 0.52 -0.4
3,738,357 + DvMF_2963 0.58 -1.2
3,738,392 + DvMF_2963 0.59 +0.1
3,738,579 - DvMF_2963 0.64 -0.9
3,738,579 - DvMF_2963 0.64 -0.7
3,738,581 - DvMF_2963 0.64 -0.3
3,738,729 + DvMF_2963 0.68 -0.9
3,739,081 - DvMF_2963 0.78 -0.4
3,739,086 + DvMF_2963 0.78 -0.4
3,739,145 + DvMF_2963 0.79 -0.7
3,739,454 - DvMF_2963 0.88 -0.5
3,739,794 - -0.1
3,739,794 - -0.5
3,740,114 + -0.7
3,740,189 - -0.4
3,740,283 - DvMF_2964 0.14 +0.7
3,740,378 + DvMF_2964 0.49 -0.3
3,740,398 + DvMF_2964 0.57 +0.2
3,740,482 + DvMF_2964 0.88 +0.0
3,740,764 - DvMF_2965 0.10 -0.6
3,740,846 + DvMF_2965 0.28 -0.4

Or see this region's nucleotide sequence