Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2810

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2809 and DvMF_2810 are separated by 376 nucleotidesDvMF_2810 and DvMF_2811 overlap by 10 nucleotides DvMF_2809: DvMF_2809 - aminotransferase class V (RefSeq), at 3,551,835 to 3,552,938 _2809 DvMF_2810: DvMF_2810 - glutamate racemase (RefSeq), at 3,553,315 to 3,554,241 _2810 DvMF_2811: DvMF_2811 - pyridoxamine kinase (RefSeq), at 3,554,232 to 3,555,125 _2811 Position (kb) 3553 3554 3555Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3552.459 kb on - strand, within DvMF_2809at 3552.506 kb on + strand, within DvMF_2809at 3552.523 kb on + strand, within DvMF_2809at 3552.524 kb on - strand, within DvMF_2809at 3552.775 kb on + strand, within DvMF_2809at 3552.815 kb on + strand, within DvMF_2809at 3552.823 kb on - strand, within DvMF_2809at 3553.313 kb on + strandat 3553.313 kb on + strandat 3553.313 kb on + strandat 3554.261 kb on - strandat 3554.523 kb on + strand, within DvMF_2811at 3554.717 kb on + strand, within DvMF_2811at 3554.786 kb on + strand, within DvMF_2811at 3554.880 kb on + strand, within DvMF_2811at 3554.969 kb on - strand, within DvMF_2811at 3555.021 kb on - strand, within DvMF_2811at 3555.127 kb on + strandat 3555.128 kb on - strandat 3555.144 kb on + strandat 3555.146 kb on + strandat 3555.154 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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3,552,459 - DvMF_2809 0.57 -0.8
3,552,506 + DvMF_2809 0.61 -0.1
3,552,523 + DvMF_2809 0.62 -0.5
3,552,524 - DvMF_2809 0.62 -0.2
3,552,775 + DvMF_2809 0.85 +0.1
3,552,815 + DvMF_2809 0.89 -1.8
3,552,823 - DvMF_2809 0.89 +0.5
3,553,313 + -0.6
3,553,313 + -0.2
3,553,313 + +0.2
3,554,261 - -2.6
3,554,523 + DvMF_2811 0.33 -1.1
3,554,717 + DvMF_2811 0.54 -2.9
3,554,786 + DvMF_2811 0.62 -0.2
3,554,880 + DvMF_2811 0.72 -1.8
3,554,969 - DvMF_2811 0.82 -5.2
3,555,021 - DvMF_2811 0.88 -1.2
3,555,127 + -0.7
3,555,128 - -0.4
3,555,144 + -0.7
3,555,146 + -0.2
3,555,154 - -0.2

Or see this region's nucleotide sequence