Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2731

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2729 and DvMF_2730 are separated by 91 nucleotidesDvMF_2730 and DvMF_2731 are separated by 179 nucleotidesDvMF_2731 and DvMF_2732 overlap by 4 nucleotidesDvMF_2732 and DvMF_2733 are separated by 18 nucleotides DvMF_2729: DvMF_2729 - hypothetical protein (RefSeq), at 3,453,698 to 3,454,342 _2729 DvMF_2730: DvMF_2730 - hypothetical protein (RefSeq), at 3,454,434 to 3,454,952 _2730 DvMF_2731: DvMF_2731 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,455,132 to 3,458,155 _2731 DvMF_2732: DvMF_2732 - TadE family protein (RefSeq), at 3,458,152 to 3,458,640 _2732 DvMF_2733: DvMF_2733 - von Willebrand factor type A (RefSeq), at 3,458,659 to 3,459,879 _2733 Position (kb) 3455 3456 3457 3458 3459Strain fitness (log2 ratio) -2 -1 0 1at 3454.300 kb on + strandat 3454.319 kb on + strandat 3454.340 kb on - strandat 3454.813 kb on + strand, within DvMF_2730at 3454.996 kb on - strandat 3455.030 kb on - strandat 3455.180 kb on - strandat 3455.196 kb on + strandat 3455.382 kb on + strandat 3455.630 kb on - strand, within DvMF_2731at 3455.669 kb on - strand, within DvMF_2731at 3455.741 kb on + strand, within DvMF_2731at 3455.746 kb on + strand, within DvMF_2731at 3455.928 kb on - strand, within DvMF_2731at 3456.314 kb on + strand, within DvMF_2731at 3456.865 kb on - strand, within DvMF_2731at 3456.865 kb on - strand, within DvMF_2731at 3456.951 kb on + strand, within DvMF_2731at 3457.193 kb on - strand, within DvMF_2731at 3457.265 kb on + strand, within DvMF_2731at 3457.530 kb on - strand, within DvMF_2731at 3457.672 kb on + strand, within DvMF_2731at 3457.795 kb on + strand, within DvMF_2731at 3458.126 kb on + strandat 3458.169 kb on + strandat 3458.382 kb on + strand, within DvMF_2732at 3458.437 kb on + strand, within DvMF_2732at 3458.473 kb on + strand, within DvMF_2732at 3458.570 kb on - strand, within DvMF_2732at 3458.848 kb on - strand, within DvMF_2733at 3458.916 kb on + strand, within DvMF_2733at 3458.960 kb on + strand, within DvMF_2733at 3459.023 kb on + strand, within DvMF_2733

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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3,454,300 + -1.0
3,454,319 + -0.7
3,454,340 - -0.9
3,454,813 + DvMF_2730 0.73 -0.6
3,454,996 - -0.7
3,455,030 - -0.5
3,455,180 - -0.5
3,455,196 + -0.5
3,455,382 + -0.8
3,455,630 - DvMF_2731 0.16 -1.1
3,455,669 - DvMF_2731 0.18 -0.6
3,455,741 + DvMF_2731 0.20 -0.7
3,455,746 + DvMF_2731 0.20 -0.6
3,455,928 - DvMF_2731 0.26 -0.3
3,456,314 + DvMF_2731 0.39 -1.4
3,456,865 - DvMF_2731 0.57 -0.9
3,456,865 - DvMF_2731 0.57 -0.4
3,456,951 + DvMF_2731 0.60 -0.6
3,457,193 - DvMF_2731 0.68 -0.9
3,457,265 + DvMF_2731 0.71 -1.1
3,457,530 - DvMF_2731 0.79 -1.1
3,457,672 + DvMF_2731 0.84 -0.8
3,457,795 + DvMF_2731 0.88 -0.6
3,458,126 + -2.6
3,458,169 + -0.6
3,458,382 + DvMF_2732 0.47 -0.4
3,458,437 + DvMF_2732 0.58 -1.3
3,458,473 + DvMF_2732 0.66 -0.5
3,458,570 - DvMF_2732 0.85 -0.5
3,458,848 - DvMF_2733 0.15 -0.0
3,458,916 + DvMF_2733 0.21 -0.9
3,458,960 + DvMF_2733 0.25 -0.4
3,459,023 + DvMF_2733 0.30 -1.3

Or see this region's nucleotide sequence