Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2710

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2709 and DvMF_2710 are separated by 447 nucleotidesDvMF_2710 and DvMF_2711 are separated by 215 nucleotidesDvMF_2711 and DvMF_2712 are separated by 9 nucleotides DvMF_2709: DvMF_2709 - nitroreductase (RefSeq), at 3,428,898 to 3,429,662 _2709 DvMF_2710: DvMF_2710 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 3,430,110 to 3,431,855 _2710 DvMF_2711: DvMF_2711 - cytochrome c family protein (RefSeq), at 3,432,071 to 3,432,541 _2711 DvMF_2712: DvMF_2712 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,432,551 to 3,434,572 _2712 Position (kb) 3430 3431 3432Strain fitness (log2 ratio) -3 -2 -1 0 1at 3429.118 kb on - strand, within DvMF_2709at 3429.582 kb on - strand, within DvMF_2709at 3429.646 kb on + strandat 3429.736 kb on - strandat 3430.173 kb on + strandat 3430.476 kb on - strand, within DvMF_2710at 3430.518 kb on + strand, within DvMF_2710at 3430.665 kb on + strand, within DvMF_2710at 3430.685 kb on + strand, within DvMF_2710at 3430.729 kb on + strand, within DvMF_2710at 3430.829 kb on + strand, within DvMF_2710at 3430.829 kb on + strand, within DvMF_2710at 3430.935 kb on + strand, within DvMF_2710at 3431.849 kb on + strandat 3431.857 kb on - strandat 3432.116 kb on - strandat 3432.169 kb on - strand, within DvMF_2711at 3432.304 kb on - strand, within DvMF_2711at 3432.339 kb on - strand, within DvMF_2711at 3432.608 kb on + strandat 3432.790 kb on + strand, within DvMF_2712

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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3,429,118 - DvMF_2709 0.29 -0.9
3,429,582 - DvMF_2709 0.89 +0.2
3,429,646 + +1.2
3,429,736 - -0.0
3,430,173 + -0.8
3,430,476 - DvMF_2710 0.21 -0.4
3,430,518 + DvMF_2710 0.23 -1.6
3,430,665 + DvMF_2710 0.32 -1.8
3,430,685 + DvMF_2710 0.33 -1.2
3,430,729 + DvMF_2710 0.35 -3.2
3,430,829 + DvMF_2710 0.41 -2.9
3,430,829 + DvMF_2710 0.41 -0.4
3,430,935 + DvMF_2710 0.47 -0.8
3,431,849 + -1.4
3,431,857 - +0.1
3,432,116 - +0.5
3,432,169 - DvMF_2711 0.21 -0.7
3,432,304 - DvMF_2711 0.49 -0.3
3,432,339 - DvMF_2711 0.57 -0.6
3,432,608 + -0.5
3,432,790 + DvMF_2712 0.12 -0.8

Or see this region's nucleotide sequence