Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2591 and DvMF_2592 are separated by 109 nucleotides DvMF_2592 and DvMF_2593 are separated by 170 nucleotides DvMF_2593 and DvMF_2594 are separated by 56 nucleotides DvMF_2594 and DvMF_2595 are separated by 140 nucleotides
DvMF_2591: DvMF_2591 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 3,275,689 to 3,276,141
_2591
DvMF_2592: DvMF_2592 - two component transcriptional regulator, Fis family (RefSeq), at 3,276,251 to 3,276,637
_2592
DvMF_2593: DvMF_2593 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 3,276,808 to 3,278,199
_2593
DvMF_2594: DvMF_2594 - hmc operon protein 5 (RefSeq), at 3,278,256 to 3,278,936
_2594
DvMF_2595: DvMF_2595 - hmc operon protein 4 (RefSeq), at 3,279,077 to 3,279,214
_2595
Position (kb)
3276
3277
3278
3279 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3275.812 kb on + strand, within DvMF_2591 at 3275.869 kb on + strand, within DvMF_2591 at 3276.448 kb on + strand, within DvMF_2592 at 3276.667 kb on + strand at 3278.208 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml remove 3,275,812 + DvMF_2591 0.27 -0.8 3,275,869 + DvMF_2591 0.40 -3.3 3,276,448 + DvMF_2592 0.51 -1.3 3,276,667 + -1.1 3,278,208 + -1.4
Or see this region's nucleotide sequence