Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2399

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2398 and DvMF_2399 are separated by 11 nucleotidesDvMF_2399 and DvMF_2400 overlap by 4 nucleotides DvMF_2398: DvMF_2398 - ABC transporter related (RefSeq), at 3,031,009 to 3,031,941 _2398 DvMF_2399: DvMF_2399 - ABC transporter related (RefSeq), at 3,031,953 to 3,032,975 _2399 DvMF_2400: DvMF_2400 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,032,972 to 3,034,093 _2400 Position (kb) 3031 3032 3033Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3031.122 kb on - strand, within DvMF_2398at 3031.324 kb on + strand, within DvMF_2398at 3031.337 kb on - strand, within DvMF_2398at 3031.750 kb on - strand, within DvMF_2398at 3031.775 kb on - strand, within DvMF_2398at 3031.918 kb on + strandat 3032.117 kb on + strand, within DvMF_2399at 3032.182 kb on - strand, within DvMF_2399at 3032.231 kb on - strand, within DvMF_2399at 3032.621 kb on + strand, within DvMF_2399at 3032.625 kb on - strand, within DvMF_2399at 3032.948 kb on + strandat 3033.155 kb on + strand, within DvMF_2400at 3033.340 kb on + strand, within DvMF_2400at 3033.525 kb on - strand, within DvMF_2400at 3033.525 kb on - strand, within DvMF_2400at 3033.597 kb on - strand, within DvMF_2400at 3033.794 kb on + strand, within DvMF_2400at 3033.832 kb on - strand, within DvMF_2400

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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3,031,122 - DvMF_2398 0.12 -2.3
3,031,324 + DvMF_2398 0.34 -0.9
3,031,337 - DvMF_2398 0.35 -1.2
3,031,750 - DvMF_2398 0.79 -1.9
3,031,775 - DvMF_2398 0.82 -1.8
3,031,918 + -3.9
3,032,117 + DvMF_2399 0.16 -1.9
3,032,182 - DvMF_2399 0.22 -1.7
3,032,231 - DvMF_2399 0.27 -2.5
3,032,621 + DvMF_2399 0.65 -2.8
3,032,625 - DvMF_2399 0.66 -1.9
3,032,948 + -3.2
3,033,155 + DvMF_2400 0.16 -0.5
3,033,340 + DvMF_2400 0.33 -2.2
3,033,525 - DvMF_2400 0.49 -1.8
3,033,525 - DvMF_2400 0.49 -1.3
3,033,597 - DvMF_2400 0.56 -1.5
3,033,794 + DvMF_2400 0.73 -1.3
3,033,832 - DvMF_2400 0.77 -2.2

Or see this region's nucleotide sequence