Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2269

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2268 and DvMF_2269 are separated by 207 nucleotidesDvMF_2269 and DvMF_2270 are separated by 18 nucleotidesDvMF_2270 and DvMF_2271 are separated by 128 nucleotides DvMF_2268: DvMF_2268 - branched-chain amino acid aminotransferase (RefSeq), at 2,850,088 to 2,851,011 _2268 DvMF_2269: DvMF_2269 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,851,219 to 2,853,285 _2269 DvMF_2270: DvMF_2270 - hypothetical protein (RefSeq), at 2,853,304 to 2,853,615 _2270 DvMF_2271: DvMF_2271 - recombination protein RecR (RefSeq), at 2,853,744 to 2,854,349 _2271 Position (kb) 2851 2852 2853 2854Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2850.691 kb on - strand, within DvMF_2268at 2850.846 kb on - strand, within DvMF_2268at 2850.846 kb on - strand, within DvMF_2268at 2851.005 kb on + strandat 2851.019 kb on - strandat 2853.726 kb on + strandat 2853.885 kb on + strand, within DvMF_2271at 2853.947 kb on + strand, within DvMF_2271at 2854.032 kb on - strand, within DvMF_2271at 2854.050 kb on + strand, within DvMF_2271at 2854.164 kb on + strand, within DvMF_2271at 2854.172 kb on - strand, within DvMF_2271at 2854.177 kb on + strand, within DvMF_2271at 2854.262 kb on + strand, within DvMF_2271

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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2,850,691 - DvMF_2268 0.65 -0.6
2,850,846 - DvMF_2268 0.82 -1.2
2,850,846 - DvMF_2268 0.82 -1.0
2,851,005 + -0.1
2,851,019 - -0.7
2,853,726 + -0.6
2,853,885 + DvMF_2271 0.23 -4.6
2,853,947 + DvMF_2271 0.33 -5.3
2,854,032 - DvMF_2271 0.48 -4.5
2,854,050 + DvMF_2271 0.50 -4.1
2,854,164 + DvMF_2271 0.69 -4.9
2,854,172 - DvMF_2271 0.71 -3.6
2,854,177 + DvMF_2271 0.71 -3.6
2,854,262 + DvMF_2271 0.85 -3.2

Or see this region's nucleotide sequence