Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2120

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2119 and DvMF_2120 are separated by 469 nucleotidesDvMF_2120 and DvMF_2121 are separated by 295 nucleotides DvMF_2119: DvMF_2119 - hypothetical protein (RefSeq), at 2,637,174 to 2,637,842 _2119 DvMF_2120: DvMF_2120 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,638,312 to 2,638,500 _2120 DvMF_2121: DvMF_2121 - 2-alkenal reductase (RefSeq), at 2,638,796 to 2,640,373 _2121 Position (kb) 2638 2639Strain fitness (log2 ratio) -2 -1 0 1at 2637.651 kb on - strand, within DvMF_2119at 2637.959 kb on - strandat 2638.145 kb on + strandat 2638.846 kb on + strandat 2638.880 kb on + strandat 2638.981 kb on + strand, within DvMF_2121at 2638.994 kb on - strand, within DvMF_2121at 2639.040 kb on + strand, within DvMF_2121at 2639.046 kb on - strand, within DvMF_2121at 2639.104 kb on + strand, within DvMF_2121at 2639.145 kb on - strand, within DvMF_2121at 2639.237 kb on + strand, within DvMF_2121at 2639.375 kb on - strand, within DvMF_2121at 2639.449 kb on - strand, within DvMF_2121

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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2,637,651 - DvMF_2119 0.71 +0.3
2,637,959 - -0.3
2,638,145 + -2.2
2,638,846 + -1.6
2,638,880 + -0.5
2,638,981 + DvMF_2121 0.12 -0.6
2,638,994 - DvMF_2121 0.13 -0.9
2,639,040 + DvMF_2121 0.15 -0.7
2,639,046 - DvMF_2121 0.16 +0.3
2,639,104 + DvMF_2121 0.20 -0.7
2,639,145 - DvMF_2121 0.22 +0.1
2,639,237 + DvMF_2121 0.28 -0.2
2,639,375 - DvMF_2121 0.37 -1.5
2,639,449 - DvMF_2121 0.41 -2.6

Or see this region's nucleotide sequence