Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2074 and DvMF_2075 are separated by 652 nucleotides DvMF_2075 and DvMF_2076 are separated by 571 nucleotides
DvMF_2074: DvMF_2074 - glycosyl transferase family 2 (RefSeq), at 2,574,675 to 2,575,799
_2074
DvMF_2075: DvMF_2075 - fumarate hydratase, class II (RefSeq), at 2,576,452 to 2,578,038
_2075
DvMF_2076: DvMF_2076 - GPR1/FUN34/yaaH family protein (RefSeq), at 2,578,610 to 2,579,161
_2076
Position (kb)
2576
2577
2578
2579 Strain fitness (log2 ratio)
-2
-1
0
1 at 2575.532 kb on + strand, within DvMF_2074 at 2575.640 kb on + strand, within DvMF_2074 at 2575.662 kb on + strand, within DvMF_2074 at 2575.704 kb on - strand at 2575.746 kb on - strand at 2575.964 kb on - strand at 2575.966 kb on + strand at 2576.015 kb on + strand at 2576.089 kb on - strand at 2576.123 kb on + strand at 2576.268 kb on - strand at 2576.371 kb on - strand at 2576.470 kb on - strand at 2576.472 kb on + strand at 2576.506 kb on - strand at 2576.605 kb on - strand at 2576.613 kb on + strand, within DvMF_2075 at 2576.680 kb on + strand, within DvMF_2075 at 2576.684 kb on + strand, within DvMF_2075 at 2576.755 kb on + strand, within DvMF_2075 at 2576.834 kb on + strand, within DvMF_2075 at 2576.958 kb on - strand, within DvMF_2075 at 2577.052 kb on + strand, within DvMF_2075 at 2577.070 kb on + strand, within DvMF_2075 at 2577.346 kb on + strand, within DvMF_2075 at 2577.361 kb on - strand, within DvMF_2075 at 2577.457 kb on - strand, within DvMF_2075 at 2577.462 kb on - strand, within DvMF_2075 at 2577.589 kb on + strand, within DvMF_2075 at 2577.603 kb on + strand, within DvMF_2075 at 2577.608 kb on + strand, within DvMF_2075 at 2577.611 kb on - strand, within DvMF_2075 at 2577.611 kb on - strand, within DvMF_2075 at 2577.648 kb on + strand, within DvMF_2075 at 2577.655 kb on + strand, within DvMF_2075 at 2577.656 kb on - strand, within DvMF_2075 at 2577.882 kb on + strand at 2577.926 kb on + strand at 2577.932 kb on - strand at 2577.932 kb on - strand at 2577.934 kb on - strand at 2577.936 kb on + strand at 2578.024 kb on + strand at 2578.079 kb on - strand at 2578.278 kb on + strand at 2578.485 kb on - strand at 2578.502 kb on - strand at 2578.582 kb on + strand at 2578.794 kb on - strand, within DvMF_2076 at 2578.920 kb on + strand, within DvMF_2076 at 2578.936 kb on - strand, within DvMF_2076 at 2578.971 kb on - strand, within DvMF_2076
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml remove 2,575,532 + DvMF_2074 0.76 +0.1 2,575,640 + DvMF_2074 0.86 -0.3 2,575,662 + DvMF_2074 0.88 -0.4 2,575,704 - -0.4 2,575,746 - -0.3 2,575,964 - -0.3 2,575,966 + -2.2 2,576,015 + -1.4 2,576,089 - -0.8 2,576,123 + +0.6 2,576,268 - -0.1 2,576,371 - -0.5 2,576,470 - -0.5 2,576,472 + -0.6 2,576,506 - -1.0 2,576,605 - -0.4 2,576,613 + DvMF_2075 0.10 +0.4 2,576,680 + DvMF_2075 0.14 -2.1 2,576,684 + DvMF_2075 0.15 -0.3 2,576,755 + DvMF_2075 0.19 -0.6 2,576,834 + DvMF_2075 0.24 -1.1 2,576,958 - DvMF_2075 0.32 -0.7 2,577,052 + DvMF_2075 0.38 -0.2 2,577,070 + DvMF_2075 0.39 -0.3 2,577,346 + DvMF_2075 0.56 -0.0 2,577,361 - DvMF_2075 0.57 -1.2 2,577,457 - DvMF_2075 0.63 -0.2 2,577,462 - DvMF_2075 0.64 -0.1 2,577,589 + DvMF_2075 0.72 -0.7 2,577,603 + DvMF_2075 0.73 -0.7 2,577,608 + DvMF_2075 0.73 -0.6 2,577,611 - DvMF_2075 0.73 +0.5 2,577,611 - DvMF_2075 0.73 -0.6 2,577,648 + DvMF_2075 0.75 -0.5 2,577,655 + DvMF_2075 0.76 -1.2 2,577,656 - DvMF_2075 0.76 +0.2 2,577,882 + -1.4 2,577,926 + -1.1 2,577,932 - +0.7 2,577,932 - +0.0 2,577,934 - -0.7 2,577,936 + -0.2 2,578,024 + -0.4 2,578,079 - -2.1 2,578,278 + -0.5 2,578,485 - -0.1 2,578,502 - -0.2 2,578,582 + -1.7 2,578,794 - DvMF_2076 0.33 -0.7 2,578,920 + DvMF_2076 0.56 -0.9 2,578,936 - DvMF_2076 0.59 -0.1 2,578,971 - DvMF_2076 0.65 +0.4
Or see this region's nucleotide sequence