Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2057

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2055 and DvMF_2056 overlap by 1 nucleotidesDvMF_2056 and DvMF_2057 overlap by 1 nucleotidesDvMF_2057 and DvMF_2058 are separated by 210 nucleotides DvMF_2055: DvMF_2055 - 2-ketoisovalerate ferredoxin reductase (RefSeq), at 2,547,279 to 2,548,364 _2055 DvMF_2056: DvMF_2056 - thiamine pyrophosphate protein domain protein TPP-binding (RefSeq), at 2,548,364 to 2,549,155 _2056 DvMF_2057: DvMF_2057 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 2,549,155 to 2,549,697 _2057 DvMF_2058: DvMF_2058 - putative superfamily I DNA and RNA helicase protein (RefSeq), at 2,549,908 to 2,555,493 _2058 Position (kb) 2549 2550Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2548.223 kb on + strand, within DvMF_2055at 2548.356 kb on - strandat 2548.430 kb on + strandat 2548.518 kb on + strand, within DvMF_2056at 2548.987 kb on - strand, within DvMF_2056at 2549.221 kb on + strand, within DvMF_2057at 2549.409 kb on - strand, within DvMF_2057at 2549.419 kb on - strand, within DvMF_2057at 2549.434 kb on + strand, within DvMF_2057at 2549.434 kb on + strand, within DvMF_2057at 2549.451 kb on + strand, within DvMF_2057at 2549.523 kb on + strand, within DvMF_2057at 2550.018 kb on + strandat 2550.300 kb on - strandat 2550.300 kb on - strandat 2550.604 kb on + strand, within DvMF_2058

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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2,548,223 + DvMF_2055 0.87 -3.5
2,548,356 - -3.4
2,548,430 + -2.5
2,548,518 + DvMF_2056 0.19 -1.1
2,548,987 - DvMF_2056 0.79 -3.0
2,549,221 + DvMF_2057 0.12 -1.6
2,549,409 - DvMF_2057 0.47 +0.2
2,549,419 - DvMF_2057 0.49 -0.8
2,549,434 + DvMF_2057 0.51 -4.0
2,549,434 + DvMF_2057 0.51 -1.4
2,549,451 + DvMF_2057 0.55 -2.2
2,549,523 + DvMF_2057 0.68 -0.4
2,550,018 + -0.7
2,550,300 - -0.3
2,550,300 - -0.7
2,550,604 + DvMF_2058 0.12 -0.8

Or see this region's nucleotide sequence