Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1809

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1808 and DvMF_1809 are separated by 307 nucleotidesDvMF_1809 and eno are separated by 359 nucleotides DvMF_1808: DvMF_1808 - protein of unknown function DUF1078 domain protein (RefSeq), at 2,208,831 to 2,210,336 _1808 DvMF_1809: DvMF_1809 - Methenyltetrahydrofolate cyclohydrolase (RefSeq), at 2,210,644 to 2,211,510 _1809 DvMF_1810: eno - phosphopyruvate hydratase (RefSeq), at 2,211,870 to 2,213,174 eno Position (kb) 2210 2211 2212Strain fitness (log2 ratio) -1 0 1at 2209.694 kb on - strand, within DvMF_1808at 2209.723 kb on + strand, within DvMF_1808at 2209.820 kb on + strand, within DvMF_1808at 2209.976 kb on - strand, within DvMF_1808at 2210.021 kb on - strand, within DvMF_1808at 2210.119 kb on + strand, within DvMF_1808at 2210.253 kb on - strandat 2210.256 kb on + strandat 2210.350 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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2,209,694 - DvMF_1808 0.57 -0.8
2,209,723 + DvMF_1808 0.59 -1.4
2,209,820 + DvMF_1808 0.66 -0.3
2,209,976 - DvMF_1808 0.76 -0.8
2,210,021 - DvMF_1808 0.79 -0.6
2,210,119 + DvMF_1808 0.86 -0.5
2,210,253 - -0.6
2,210,256 + -0.7
2,210,350 + -0.3

Or see this region's nucleotide sequence