Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1564

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1563 and DvMF_1564 are separated by 0 nucleotidesDvMF_1564 and DvMF_1565 are separated by 372 nucleotides DvMF_1563: DvMF_1563 - uracil-DNA glycosylase (RefSeq), at 1,927,836 to 1,929,035 _1563 DvMF_1564: DvMF_1564 - aminotransferase class I and II (RefSeq), at 1,929,036 to 1,930,238 _1564 DvMF_1565: DvMF_1565 - hypothetical protein (RefSeq), at 1,930,611 to 1,931,303 _1565 Position (kb) 1929 1930 1931Strain fitness (log2 ratio) -1 0 1at 1928.390 kb on - strand, within DvMF_1563at 1928.429 kb on + strand, within DvMF_1563at 1928.627 kb on - strand, within DvMF_1563at 1928.724 kb on - strand, within DvMF_1563at 1928.724 kb on - strand, within DvMF_1563at 1929.091 kb on - strandat 1929.278 kb on - strand, within DvMF_1564at 1929.553 kb on + strand, within DvMF_1564at 1929.643 kb on + strand, within DvMF_1564at 1929.672 kb on + strand, within DvMF_1564at 1930.161 kb on - strandat 1930.161 kb on - strandat 1930.211 kb on - strandat 1930.293 kb on - strandat 1930.391 kb on - strandat 1930.391 kb on - strandat 1930.391 kb on - strandat 1930.391 kb on - strandat 1930.736 kb on + strand, within DvMF_1565at 1930.783 kb on + strand, within DvMF_1565at 1930.793 kb on + strand, within DvMF_1565at 1930.801 kb on - strand, within DvMF_1565at 1931.178 kb on + strand, within DvMF_1565at 1931.191 kb on - strand, within DvMF_1565at 1931.229 kb on + strand, within DvMF_1565

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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1,928,390 - DvMF_1563 0.46 -1.1
1,928,429 + DvMF_1563 0.49 -1.4
1,928,627 - DvMF_1563 0.66 -0.6
1,928,724 - DvMF_1563 0.74 +1.2
1,928,724 - DvMF_1563 0.74 -0.6
1,929,091 - -1.0
1,929,278 - DvMF_1564 0.20 -0.3
1,929,553 + DvMF_1564 0.43 -1.3
1,929,643 + DvMF_1564 0.50 -1.2
1,929,672 + DvMF_1564 0.53 -1.0
1,930,161 - -1.2
1,930,161 - -0.0
1,930,211 - -0.7
1,930,293 - -0.2
1,930,391 - +0.4
1,930,391 - -1.3
1,930,391 - -0.6
1,930,391 - -0.1
1,930,736 + DvMF_1565 0.18 -0.6
1,930,783 + DvMF_1565 0.25 -0.1
1,930,793 + DvMF_1565 0.26 -0.9
1,930,801 - DvMF_1565 0.27 -0.4
1,931,178 + DvMF_1565 0.82 -0.6
1,931,191 - DvMF_1565 0.84 -0.5
1,931,229 + DvMF_1565 0.89 -0.5

Or see this region's nucleotide sequence