Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1313

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1312 and DvMF_1313 are separated by 105 nucleotidesDvMF_1313 and DvMF_1314 are separated by 331 nucleotides DvMF_1312: DvMF_1312 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,602,444 to 1,603,436 _1312 DvMF_1313: DvMF_1313 - hypothetical protein (RefSeq), at 1,603,542 to 1,604,411 _1313 DvMF_1314: DvMF_1314 - putative aminopeptidase 1 (RefSeq), at 1,604,743 to 1,606,194 _1314 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -1 0 1at 1602.657 kb on - strand, within DvMF_1312at 1602.657 kb on - strand, within DvMF_1312at 1602.694 kb on + strand, within DvMF_1312at 1602.746 kb on - strand, within DvMF_1312at 1602.787 kb on - strand, within DvMF_1312at 1602.824 kb on + strand, within DvMF_1312at 1602.912 kb on + strand, within DvMF_1312at 1603.438 kb on - strandat 1603.439 kb on - strandat 1603.631 kb on + strand, within DvMF_1313at 1603.690 kb on - strand, within DvMF_1313at 1604.440 kb on - strandat 1604.510 kb on + strandat 1604.535 kb on + strandat 1604.625 kb on + strandat 1604.660 kb on - strandat 1604.914 kb on + strand, within DvMF_1314at 1604.963 kb on - strand, within DvMF_1314at 1605.222 kb on + strand, within DvMF_1314at 1605.306 kb on + strand, within DvMF_1314

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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1,602,657 - DvMF_1312 0.21 +0.2
1,602,657 - DvMF_1312 0.21 -0.2
1,602,694 + DvMF_1312 0.25 -0.9
1,602,746 - DvMF_1312 0.30 +0.0
1,602,787 - DvMF_1312 0.35 +0.2
1,602,824 + DvMF_1312 0.38 +0.3
1,602,912 + DvMF_1312 0.47 +0.1
1,603,438 - -0.2
1,603,439 - -0.5
1,603,631 + DvMF_1313 0.10 -0.2
1,603,690 - DvMF_1313 0.17 -0.3
1,604,440 - -0.8
1,604,510 + +0.4
1,604,535 + -0.4
1,604,625 + -0.5
1,604,660 - -0.6
1,604,914 + DvMF_1314 0.12 -0.4
1,604,963 - DvMF_1314 0.15 -0.2
1,605,222 + DvMF_1314 0.33 +1.0
1,605,306 + DvMF_1314 0.39 -1.3

Or see this region's nucleotide sequence