Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1145

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1143 and DvMF_1144 are separated by 124 nucleotidesDvMF_1144 and DvMF_1145 overlap by 4 nucleotidesDvMF_1145 and DvMF_1146 are separated by 532 nucleotides DvMF_1143: DvMF_1143 - flavodoxin (RefSeq), at 1,403,253 to 1,403,699 _1143 DvMF_1144: DvMF_1144 - hypothetical protein (RefSeq), at 1,403,824 to 1,404,039 _1144 DvMF_1145: DvMF_1145 - hypothetical protein (RefSeq), at 1,404,036 to 1,404,221 _1145 DvMF_1146: DvMF_1146 - hypothetical protein (RefSeq), at 1,404,754 to 1,405,446 _1146 Position (kb) 1404 1405Strain fitness (log2 ratio) -1 0 1at 1403.214 kb on - strandat 1403.329 kb on + strand, within DvMF_1143at 1403.412 kb on - strand, within DvMF_1143at 1403.702 kb on - strandat 1403.783 kb on + strandat 1403.815 kb on - strandat 1403.829 kb on - strandat 1403.835 kb on - strandat 1403.948 kb on + strand, within DvMF_1144at 1403.948 kb on + strand, within DvMF_1144at 1403.976 kb on + strand, within DvMF_1144at 1404.095 kb on + strand, within DvMF_1145at 1404.555 kb on + strandat 1404.563 kb on - strandat 1404.676 kb on + strandat 1404.803 kb on - strandat 1404.854 kb on + strand, within DvMF_1146at 1405.166 kb on + strand, within DvMF_1146

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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1,403,214 - -0.3
1,403,329 + DvMF_1143 0.17 -0.8
1,403,412 - DvMF_1143 0.36 -0.1
1,403,702 - -0.2
1,403,783 + +0.4
1,403,815 - -0.5
1,403,829 - -0.5
1,403,835 - -0.3
1,403,948 + DvMF_1144 0.57 -0.9
1,403,948 + DvMF_1144 0.57 -0.4
1,403,976 + DvMF_1144 0.70 -0.6
1,404,095 + DvMF_1145 0.32 -0.4
1,404,555 + -0.0
1,404,563 - +0.3
1,404,676 + +0.2
1,404,803 - -0.7
1,404,854 + DvMF_1146 0.14 -0.9
1,405,166 + DvMF_1146 0.59 -0.3

Or see this region's nucleotide sequence