Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0860 and DvMF_0861 are separated by 89 nucleotides DvMF_0861 and DvMF_0862 overlap by 14 nucleotides DvMF_0862 and DvMF_0863 are separated by 243 nucleotides
DvMF_0860: DvMF_0860 - extracellular solute-binding protein family 3 (RefSeq), at 1,036,462 to 1,037,202
_0860
DvMF_0861: DvMF_0861 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,037,292 to 1,038,083
_0861
DvMF_0862: DvMF_0862 - ABC transporter related (RefSeq), at 1,038,070 to 1,038,816
_0862
DvMF_0863: DvMF_0863 - hypothetical protein (RefSeq), at 1,039,060 to 1,039,740
_0863
Position (kb)
1038
1039 Strain fitness (log2 ratio)
-2
-1
0
1 at 1037.124 kb on - strand, within DvMF_0860 at 1037.236 kb on - strand at 1037.302 kb on - strand at 1037.434 kb on + strand, within DvMF_0861 at 1037.434 kb on + strand, within DvMF_0861 at 1037.476 kb on + strand, within DvMF_0861 at 1037.644 kb on - strand, within DvMF_0861 at 1037.709 kb on - strand, within DvMF_0861 at 1037.805 kb on - strand, within DvMF_0861 at 1037.819 kb on + strand, within DvMF_0861 at 1037.907 kb on - strand, within DvMF_0861 at 1038.023 kb on + strand at 1038.031 kb on - strand at 1038.283 kb on + strand, within DvMF_0862 at 1038.408 kb on + strand, within DvMF_0862 at 1038.544 kb on - strand, within DvMF_0862 at 1038.560 kb on + strand, within DvMF_0862 at 1038.910 kb on - strand at 1039.003 kb on - strand at 1039.124 kb on + strand at 1039.401 kb on - strand, within DvMF_0863
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml remove 1,037,124 - DvMF_0860 0.89 -0.2 1,037,236 - +0.1 1,037,302 - -2.5 1,037,434 + DvMF_0861 0.18 -0.9 1,037,434 + DvMF_0861 0.18 -0.4 1,037,476 + DvMF_0861 0.23 -0.4 1,037,644 - DvMF_0861 0.44 -0.6 1,037,709 - DvMF_0861 0.53 -1.6 1,037,805 - DvMF_0861 0.65 -0.1 1,037,819 + DvMF_0861 0.67 -1.3 1,037,907 - DvMF_0861 0.78 -0.5 1,038,023 + -0.4 1,038,031 - -0.9 1,038,283 + DvMF_0862 0.29 -0.5 1,038,408 + DvMF_0862 0.45 -1.7 1,038,544 - DvMF_0862 0.63 -0.9 1,038,560 + DvMF_0862 0.66 -2.1 1,038,910 - -0.8 1,039,003 - -1.8 1,039,124 + -0.4 1,039,401 - DvMF_0863 0.50 -1.0
Or see this region's nucleotide sequence