Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0804

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0803 and DvMF_0804 are separated by 318 nucleotidesDvMF_0804 and DvMF_0805 are separated by 545 nucleotides DvMF_0803: DvMF_0803 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 967,409 to 969,139 _0803 DvMF_0804: DvMF_0804 - UspA domain protein (RefSeq), at 969,458 to 969,874 _0804 DvMF_0805: DvMF_0805 - protein of unknown function DUF6 transmembrane (RefSeq), at 970,420 to 971,280 _0805 Position (kb) 969 970Strain fitness (log2 ratio) -2 -1 0 1at 968.461 kb on + strand, within DvMF_0803at 968.594 kb on + strand, within DvMF_0803at 968.768 kb on - strand, within DvMF_0803at 968.985 kb on - strandat 969.350 kb on - strandat 969.423 kb on + strandat 969.544 kb on + strand, within DvMF_0804at 969.651 kb on + strand, within DvMF_0804at 969.651 kb on + strand, within DvMF_0804at 969.710 kb on - strand, within DvMF_0804at 969.710 kb on - strand, within DvMF_0804at 969.769 kb on + strand, within DvMF_0804at 969.777 kb on - strand, within DvMF_0804at 969.816 kb on + strand, within DvMF_0804at 969.816 kb on + strand, within DvMF_0804at 969.822 kb on + strand, within DvMF_0804at 970.222 kb on - strandat 970.239 kb on + strandat 970.506 kb on - strand, within DvMF_0805at 970.551 kb on - strand, within DvMF_0805at 970.765 kb on - strand, within DvMF_0805

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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968,461 + DvMF_0803 0.61 -1.1
968,594 + DvMF_0803 0.68 +0.2
968,768 - DvMF_0803 0.79 -0.3
968,985 - -0.6
969,350 - -0.1
969,423 + -1.1
969,544 + DvMF_0804 0.21 -1.4
969,651 + DvMF_0804 0.46 +0.4
969,651 + DvMF_0804 0.46 +0.3
969,710 - DvMF_0804 0.60 -0.6
969,710 - DvMF_0804 0.60 +0.2
969,769 + DvMF_0804 0.75 -0.4
969,777 - DvMF_0804 0.76 -1.2
969,816 + DvMF_0804 0.86 -2.2
969,816 + DvMF_0804 0.86 -0.1
969,822 + DvMF_0804 0.87 -1.3
970,222 - -0.4
970,239 + -1.0
970,506 - DvMF_0805 0.10 -0.8
970,551 - DvMF_0805 0.15 -0.5
970,765 - DvMF_0805 0.40 -0.6

Or see this region's nucleotide sequence