Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0739

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0737 and DvMF_0738 overlap by 4 nucleotidesDvMF_0738 and DvMF_0739 are separated by 1 nucleotidesDvMF_0739 and DvMF_0740 overlap by 14 nucleotides DvMF_0737: DvMF_0737 - protein of unknown function DUF1320 (RefSeq), at 885,398 to 885,817 _0737 DvMF_0738: DvMF_0738 - Domain of unknown function DUF1834 (RefSeq), at 885,814 to 886,434 _0738 DvMF_0739: DvMF_0739 - hypothetical protein (RefSeq), at 886,436 to 886,639 _0739 DvMF_0740: DvMF_0740 - Mu tail sheath family protein (RefSeq), at 886,626 to 888,047 _0740 Position (kb) 886 887Strain fitness (log2 ratio) -3 -2 -1 0 1at 886.137 kb on - strand, within DvMF_0738at 886.213 kb on + strand, within DvMF_0738at 886.458 kb on + strand, within DvMF_0739at 886.537 kb on - strand, within DvMF_0739at 886.885 kb on + strand, within DvMF_0740at 887.030 kb on + strand, within DvMF_0740at 887.147 kb on + strand, within DvMF_0740at 887.337 kb on - strand, within DvMF_0740at 887.348 kb on + strand, within DvMF_0740at 887.480 kb on - strand, within DvMF_0740at 887.480 kb on - strand, within DvMF_0740at 887.635 kb on - strand, within DvMF_0740

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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886,137 - DvMF_0738 0.52 -0.3
886,213 + DvMF_0738 0.64 -0.7
886,458 + DvMF_0739 0.11 -0.5
886,537 - DvMF_0739 0.50 -1.2
886,885 + DvMF_0740 0.18 -0.4
887,030 + DvMF_0740 0.28 -0.5
887,147 + DvMF_0740 0.37 -3.1
887,337 - DvMF_0740 0.50 -1.4
887,348 + DvMF_0740 0.51 -0.4
887,480 - DvMF_0740 0.60 -0.6
887,480 - DvMF_0740 0.60 -0.2
887,635 - DvMF_0740 0.71 -2.5

Or see this region's nucleotide sequence