Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0667

Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0666 and DvMF_0667 overlap by 4 nucleotidesDvMF_0667 and DvMF_0668 are separated by 55 nucleotides DvMF_0666: DvMF_0666 - hypothetical protein (RefSeq), at 803,934 to 805,100 _0666 DvMF_0667: DvMF_0667 - hypothetical protein (RefSeq), at 805,097 to 806,107 _0667 DvMF_0668: DvMF_0668 - ATP-grasp protein-like protein (RefSeq), at 806,163 to 807,344 _0668 Position (kb) 805 806 807Strain fitness (log2 ratio) -2 -1 0 1at 804.870 kb on + strand, within DvMF_0666at 805.061 kb on + strandat 805.206 kb on - strand, within DvMF_0667at 805.346 kb on + strand, within DvMF_0667at 805.757 kb on + strand, within DvMF_0667at 805.763 kb on - strand, within DvMF_0667at 805.794 kb on + strand, within DvMF_0667at 805.814 kb on + strand, within DvMF_0667at 805.822 kb on - strand, within DvMF_0667at 805.822 kb on - strand, within DvMF_0667at 805.869 kb on + strand, within DvMF_0667at 806.186 kb on - strandat 806.592 kb on + strand, within DvMF_0668at 807.015 kb on + strand, within DvMF_0668

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml
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804,870 + DvMF_0666 0.80 -2.2
805,061 + +0.1
805,206 - DvMF_0667 0.11 -0.8
805,346 + DvMF_0667 0.25 -0.8
805,757 + DvMF_0667 0.65 +0.3
805,763 - DvMF_0667 0.66 -0.5
805,794 + DvMF_0667 0.69 -1.0
805,814 + DvMF_0667 0.71 -0.1
805,822 - DvMF_0667 0.72 +0.3
805,822 - DvMF_0667 0.72 +1.2
805,869 + DvMF_0667 0.76 -0.3
806,186 - -0.8
806,592 + DvMF_0668 0.36 +0.6
807,015 + DvMF_0668 0.72 -2.0

Or see this region's nucleotide sequence