Experiment: MoYLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0563 and DvMF_0564 are separated by 102 nucleotides DvMF_0564 and aspA overlap by 4 nucleotides aspA and DvMF_0566 are separated by 249 nucleotides
DvMF_0563: DvMF_0563 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 662,862 to 665,171
_0563
DvMF_0564: DvMF_0564 - cyclase family protein (RefSeq), at 665,274 to 666,008
_0564
DvMF_0565: aspA - aspartate ammonia-lyase (RefSeq), at 666,005 to 667,570
aspA
DvMF_0566: DvMF_0566 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 667,820 to 668,419
_0566
Position (kb) 666
667
668 Strain fitness (log2 ratio) -2
-1
0
1 at 665.226 kb on + strand at 665.257 kb on + strand at 665.378 kb on - strand, within DvMF_0564 at 665.414 kb on + strand, within DvMF_0564 at 665.593 kb on + strand, within DvMF_0564 at 665.884 kb on - strand, within DvMF_0564 at 665.884 kb on - strand, within DvMF_0564 at 666.028 kb on + strand at 666.063 kb on - strand at 666.089 kb on + strand at 666.110 kb on - strand at 666.147 kb on + strand at 666.149 kb on + strand at 666.392 kb on - strand, within aspA at 666.711 kb on + strand, within aspA at 667.083 kb on - strand, within aspA at 667.276 kb on - strand, within aspA at 667.284 kb on + strand, within aspA at 667.377 kb on + strand, within aspA at 667.731 kb on + strand at 667.843 kb on - strand at 667.891 kb on + strand, within DvMF_0566 at 667.914 kb on + strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 668.064 kb on - strand, within DvMF_0566
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with D-Cycloserine 0.25 mg/ml remove 665,226 + -0.7 665,257 + -0.7 665,378 - DvMF_0564 0.14 -0.2 665,414 + DvMF_0564 0.19 -0.2 665,593 + DvMF_0564 0.43 -0.5 665,884 - DvMF_0564 0.83 -0.8 665,884 - DvMF_0564 0.83 +0.3 666,028 + -1.1 666,063 - -0.5 666,089 + +0.2 666,110 - -1.3 666,147 + +1.1 666,149 + -0.3 666,392 - aspA DvMF_0565 0.25 -0.6 666,711 + aspA DvMF_0565 0.45 -0.5 667,083 - aspA DvMF_0565 0.69 -1.0 667,276 - aspA DvMF_0565 0.81 -0.4 667,284 + aspA DvMF_0565 0.82 -2.0 667,377 + aspA DvMF_0565 0.88 +0.3 667,731 + -0.3 667,843 - -0.8 667,891 + DvMF_0566 0.12 +0.1 667,914 + DvMF_0566 0.16 -0.8 667,922 - DvMF_0566 0.17 -0.5 667,922 - DvMF_0566 0.17 -0.3 667,922 - DvMF_0566 0.17 -1.1 668,064 - DvMF_0566 0.41 +0.5
Or see this region's nucleotide sequence